PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028080421.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 411aa MW: 47521.7 Da PI: 8.2055

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028080421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.8e-05	156	179	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H r H XP_028080421.1 156 YVCGVCGRKCKTNLDLKKHFRQlH 179 9******************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MNPLCYALEL VPLQTPSHLP FKIKPQTTNP FNIKTQFPST FKPQFKTNPH PLQRIKSSAA 60 EIDMVRNKEG VYAAKAKKVV VLWDLDNKPP RGPPYQAAMA LKQVAQRFGD VVDISAYANR 120 HAFIHLPQWV LEERRARRRL DILERKGVAP PPPEPYVCGV CGRKCKTNLD LKKHFRQLHE 180 RERQKKLNRM RSLKGKKRNR FKERFIDGNH KYTEAAKTLI TPKVGYGLAS GLRRAGVYVK 240 TVEDKPQAAD WALKRQMQHS MSRGIDWLFL VSDDSDFSEM LRRAREANLG TVVVGDWDRA 300 LGRHADLWVP WIAVENGEIS EEDLNRRNRR RREFVERDDG SCSITQFDGE DRIDGSLDSV 360 VDELVTVRTD YHNMEISAFS EGEEEEWDYE EDGDFYLDSD DEGREEDGGY F

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MNPLCYALEL VPLQTPSHLP FKIKPQTTNP FNIKTQFPST FKPQFKTNPH PLQRIKSSAA  60
EIDMVRNKEG VYAAKAKKVV VLWDLDNKPP RGPPYQAAMA LKQVAQRFGD VVDISAYANR  120
HAFIHLPQWV LEERRARRRL DILERKGVAP PPPEPYVCGV CGRKCKTNLD LKKHFRQLHE  180
RERQKKLNRM RSLKGKKRNR FKERFIDGNH KYTEAAKTLI TPKVGYGLAS GLRRAGVYVK  240
TVEDKPQAAD WALKRQMQHS MSRGIDWLFL VSDDSDFSEM LRRAREANLG TVVVGDWDRA  300
LGRHADLWVP WIAVENGEIS EEDLNRRNRR RREFVERDDG SCSITQFDGE DRIDGSLDSV  360
VDELVTVRTD YHNMEISAFS EGEEEEWDYE EDGDFYLDSD DEGREEDGGY F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	326	331	RRNRRR
2	326	333	RRNRRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-142	C2H2 family protein