PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028080306.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 293aa    MW: 30920.2 Da    PI: 9.6839
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028080306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.8e-073659225
                    -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                    k ++C+ f+ t  C++G++C+F H
  XP_028080306.1 36 KSKPCMKFFSTAGCPFGENCHFLH 59
                    7789******************** PP
2zf-CCCH26.31.3e-0899124227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C+ +     Ck+Gd+C+FaHg+
  XP_028080306.1  99 KTRMCNKYNTAEGCKFGDKCHFAHGE 124
                     89**********************96 PP
3zf-CCCH34.33.9e-11260284126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+ C +fa+ G C +G+rC+FaHg
  XP_028080306.1 260 YKTKMCENFAK-GSCTFGERCHFAHG 284
                     9**********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MDTRKRARPV ARFNSNGGVK KSKQEMDSLS SGIGSKSKPC MKFFSTAGCP FGENCHFLHY  60
VPGGYNAVAQ MMNLAPAPVS RNMAAPPPIP DGSSPSGVKT RMCNKYNTAE GCKFGDKCHF  120
AHGEWELGKP VAPSQDDSRA MGAILSRFPG RIEPPAPAPV TGFGDSATAK ISVDASLAGA  180
IIGKGGVNSK QICRQTGVKL SIRDHESDAN LRNIELEGTF DQIKQASSMV RELIVSVGSM  240
GGHAKTPGAP ASSHPAASNY KTKMCENFAK GSCTFGERCH FAHGAAELRK SGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-62C3H family protein