PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028079963.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 338aa MW: 36661.9 Da PI: 7.9172 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33 | 1e-10 | 23 | 49 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f +t Ck+G rCkF+H++ XP_028079963.1 23 PGEPDCPYFVKTQRCKFGLRCKFNHPK 49 5789*********************96 PP | |||||||
2 | zf-CCCH | 39.4 | 1e-12 | 72 | 96 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G++CkF+H++ XP_028079963.1 72 EPPCAFYMKTGKCKFGATCKFHHPK 96 79*********************96 PP | |||||||
3 | zf-CCCH | 39 | 1.4e-12 | 149 | 172 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_028079963.1 149 EVDCPFYLKTGSCKYGATCRYNHP 172 689********************9 PP | |||||||
4 | zf-CCCH | 41.5 | 2.3e-13 | 233 | 256 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG Ck+G+rCkF+H+ XP_028079963.1 233 QIECDFYMKTGVCKFGERCKFHHP 256 568********************8 PP | |||||||
5 | zf-CCCH | 39.2 | 1.2e-12 | 289 | 310 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++C+F H+p XP_028079963.1 289 CPYYMKTGTCKYGATCRFDHPP 310 ********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence |
MGPSSALLIV PLTATSESLP ERPGEPDCPY FVKTQRCKFG LRCKFNHPKD KAVALDARES 60 AGFSDLPDRP SEPPCAFYMK TGKCKFGATC KFHHPKDIDL TAAGQDNGND GQIEVVISND 120 GTVEVNPMKP PFTPALFHNS KGLPMRLGEV DCPFYLKTGS CKYGATCRYN HPDRYAINPP 180 AAAIGPAIIA SPAAHLNIGV VNPAASILQT IDPRLTQTTF GLAPTIFPQR PGQIECDFYM 240 KTGVCKFGER CKFHHPIDRS ALTLSKEAQE QNVKLSLAGL PRREGSVHCP YYMKTGTCKY 300 GATCRFDHPP PGEVMALATS QETSTSVGGE VTAQELQQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-134 | C3H family protein |