PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028079963.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 338aa    MW: 36661.9 Da    PI: 7.9172
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028079963.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-102349127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C++f +t  Ck+G rCkF+H++
  XP_028079963.1 23 PGEPDCPYFVKTQRCKFGLRCKFNHPK 49
                    5789*********************96 PP

2zf-CCCH39.41e-127296327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    +++C f+++tG Ck+G++CkF+H++
  XP_028079963.1 72 EPPCAFYMKTGKCKFGATCKFHHPK 96
                    79*********************96 PP

3zf-CCCH391.4e-12149172326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C+f+++tG CkyG++C+++H+
  XP_028079963.1 149 EVDCPFYLKTGSCKYGATCRYNHP 172
                     689********************9 PP

4zf-CCCH41.52.3e-13233256326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     + +C+f+++tG Ck+G+rCkF+H+
  XP_028079963.1 233 QIECDFYMKTGVCKFGERCKFHHP 256
                     568********************8 PP

5zf-CCCH39.21.2e-12289310627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C+++++tGtCkyG++C+F H+p
  XP_028079963.1 289 CPYYMKTGTCKYGATCRFDHPP 310
                     ********************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MGPSSALLIV PLTATSESLP ERPGEPDCPY FVKTQRCKFG LRCKFNHPKD KAVALDARES  60
AGFSDLPDRP SEPPCAFYMK TGKCKFGATC KFHHPKDIDL TAAGQDNGND GQIEVVISND  120
GTVEVNPMKP PFTPALFHNS KGLPMRLGEV DCPFYLKTGS CKYGATCRYN HPDRYAINPP  180
AAAIGPAIIA SPAAHLNIGV VNPAASILQT IDPRLTQTTF GLAPTIFPQR PGQIECDFYM  240
KTGVCKFGER CKFHHPIDRS ALTLSKEAQE QNVKLSLAGL PRREGSVHCP YYMKTGTCKY  300
GATCRFDHPP PGEVMALATS QETSTSVGGE VTAQELQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-134C3H family protein