PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028079962.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 502aa MW: 54055.6 Da PI: 6.9534

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028079962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.5	7.2e-11	162	186	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_028079962.1 162 GEKDCAHYMLTRTCKFGDSCKFDHP 186 7889********************8 PP
2	zf-CCCH	38.7	1.6e-12	236	260	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG Ck+G++CkF+H++ XP_028079962.1 236 EPPCAFYMKTGKCKFGATCKFHHPK 260 79*********************96 PP
3	zf-CCCH	38.3	2.2e-12	313	336	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG++C+++H+ XP_028079962.1 313 EVDCPFYLKTGSCKYGATCRYNHP 336 689********************9 PP
4	zf-CCCH	40.8	3.7e-13	397	420	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG Ck+G+rCkF+H+ XP_028079962.1 397 QIECDFYMKTGVCKFGERCKFHHP 420 568********************8 PP
5	zf-CCCH	38.5	1.9e-12	453	474	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++C+F H+p XP_028079962.1 453 CPYYMKTGTCKYGATCRFDHPP 474 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MANQLYGYNH HSSSYGGASN LSSLYSSRSV GDSFLSADSS LRGSSRYVGG ADPLGGSASM 60 LFSQSDAHRF SASDYSAARV STSASSHLAS QLSWPGVDIG AASAVDPYGA IKRPSDSLYH 120 QTLLGAHNTI GQSEAWFSTN PLAKRPRFES ASNLPIYPQR PGEKDCAHYM LTRTCKFGDS 180 CKFDHPIWVP EGGIPDWKEV PLTATSESLP ERPGEPDCPD ARESAGFSDL PDRPSEPPCA 240 FYMKTGKCKF GATCKFHHPK DIDLTAAGQD NGNDGQIEVV ISNDGTVEVN PMKPPFTPAL 300 FHNSKGLPMR LGEVDCPFYL KTGSCKYGAT CRYNHPDRYA INPPAAAIGP AIIASPAAHL 360 NIGVVNPAAS ILQTIDPRLT QTTFGLAPTI FPQRPGQIEC DFYMKTGVCK FGERCKFHHP 420 IDRSALTLSK EAQEQNVKLS LAGLPRREGS VHCPYYMKTG TCKYGATCRF DHPPPGEVMA 480 LATSQETSTS VGGEVTAQEL QQ

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MANQLYGYNH HSSSYGGASN LSSLYSSRSV GDSFLSADSS LRGSSRYVGG ADPLGGSASM  60
LFSQSDAHRF SASDYSAARV STSASSHLAS QLSWPGVDIG AASAVDPYGA IKRPSDSLYH  120
QTLLGAHNTI GQSEAWFSTN PLAKRPRFES ASNLPIYPQR PGEKDCAHYM LTRTCKFGDS  180
CKFDHPIWVP EGGIPDWKEV PLTATSESLP ERPGEPDCPD ARESAGFSDL PDRPSEPPCA  240
FYMKTGKCKF GATCKFHHPK DIDLTAAGQD NGNDGQIEVV ISNDGTVEVN PMKPPFTPAL  300
FHNSKGLPMR LGEVDCPFYL KTGSCKYGAT CRYNHPDRYA INPPAAAIGP AIIASPAAHL  360
NIGVVNPAAS ILQTIDPRLT QTTFGLAPTI FPQRPGQIEC DFYMKTGVCK FGERCKFHHP  420
IDRSALTLSK EAQEQNVKLS LAGLPRREGS VHCPYYMKTG TCKYGATCRF DHPPPGEVMA  480
LATSQETSTS VGGEVTAQEL QQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-180	C3H family protein