PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028079961.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 528aa    MW: 57136.3 Da    PI: 7.7515
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028079961.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.6e-11162186226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++ t tCk+Gd+CkF H+
  XP_028079961.1 162 GEKDCAHYMLTRTCKFGDSCKFDHP 186
                     7889********************8 PP
2zf-CCCH32.31.8e-10213239127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C++f +t  Ck+G rCkF+H++
  XP_028079961.1 213 PGEPDCPYFVKTQRCKFGLRCKFNHPK 239
                     5789*********************96 PP
3zf-CCCH38.61.7e-12262286327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C f+++tG Ck+G++CkF+H++
  XP_028079961.1 262 EPPCAFYMKTGKCKFGATCKFHHPK 286
                     79*********************96 PP
4zf-CCCH38.22.4e-12339362326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C+f+++tG CkyG++C+++H+
  XP_028079961.1 339 EVDCPFYLKTGSCKYGATCRYNHP 362
                     689********************9 PP
5zf-CCCH40.73.9e-13423446326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     + +C+f+++tG Ck+G+rCkF+H+
  XP_028079961.1 423 QIECDFYMKTGVCKFGERCKFHHP 446
                     568********************8 PP
6zf-CCCH38.42e-12479500627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C+++++tGtCkyG++C+F H+p
  XP_028079961.1 479 CPYYMKTGTCKYGATCRFDHPP 500
                     ********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MANQLYGYNH HSSSYGGASN LSSLYSSRSV GDSFLSADSS LRGSSRYVGG ADPLGGSASM  60
LFSQSDAHRF SASDYSAARV STSASSHLAS QLSWPGVDIG AASAVDPYGA IKRPSDSLYH  120
QTLLGAHNTI GQSEAWFSTN PLAKRPRFES ASNLPIYPQR PGEKDCAHYM LTRTCKFGDS  180
CKFDHPIWVP EGGIPDWKEV PLTATSESLP ERPGEPDCPY FVKTQRCKFG LRCKFNHPKD  240
KAVALDARES AGFSDLPDRP SEPPCAFYMK TGKCKFGATC KFHHPKDIDL TAAGQDNGND  300
GQIEVVISND GTVEVNPMKP PFTPALFHNS KGLPMRLGEV DCPFYLKTGS CKYGATCRYN  360
HPDRYAINPP AAAIGPAIIA SPAAHLNIGV VNPAASILQT IDPRLTQTTF GLAPTIFPQR  420
PGQIECDFYM KTGVCKFGER CKFHHPIDRS ALTLSKEAQE QNVKLSLAGL PRREGSVHCP  480
YYMKTGTCKY GATCRFDHPP PGEVMALATS QETSTSVGGE VTAQELQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0C3H family protein