PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028079863.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 234aa MW: 26288.5 Da PI: 8.1903 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64 | 2.2e-20 | 71 | 124 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eqle Le+ F+++ +++ +++ +LAk+lgL+ rqV vWFqNrRa++k XP_028079863.1 71 KKKRLTSEQLESLESSFQEEIKLDPDRKMKLAKELGLQPRQVAVWFQNRRARWK 124 56779************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.2 | 5.4e-39 | 70 | 161 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekk+rl++eq+++LE+sF+ee kL+p+rK++la+eLglqprqvavWFqnrRAR+k+kqlE+ y++Lk ++d++++e+++L++ev++L++ +k XP_028079863.1 70 EKKKRLTSEQLESLESSFQEEIKLDPDRKMKLAKELGLQPRQVAVWFQNRRARWKAKQLERLYDSLKLQFDSVSREKQKLQDEVSALKAMVK 161 69**************************************************************************************8887 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 234 aa Download sequence |
MDWNMGNLRP PFVSRPENSS SFLYNYNYDY YPGLEMKYPA AAQGSQHAGV AISGMEKNSN 60 CDMGGGGGNE KKKRLTSEQL ESLESSFQEE IKLDPDRKMK LAKELGLQPR QVAVWFQNRR 120 ARWKAKQLER LYDSLKLQFD SVSREKQKLQ DEVSALKAMV KDQAMKNIQA SAGHTEISGE 180 ETVESTSVGN RSSSRHGGTS HPQMAHGNYV FNVDELNPVM PPYCWGAVLP SSYP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 71 | 100 | KKKRLTSEQLESLESSFQEEIKLDPDRKMK |
2 | 119 | 127 | RRARWKAKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03790.1 | 9e-49 | HD-ZIP family protein |