PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028079839.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 344aa MW: 38894.6 Da PI: 6.8937

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028079839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	8e-05	183	202	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_028079839.1 183 FSCPLCFKTFNRYNNMQMHM 202 89*****************9 PP
2	zf-C2H2	14.6	9.7e-05	267	289	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_028079839.1 267 FMCRKCGKAFAVRGDWRTHEKNC 289 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MSDPYSNYFN GWFNPNPVHH FSSSTSSSNP PFHCPFGFNL YPNDINSYYH SSLPSPPSPP 60 LREALPLLSL SPIRPEPQER DSSCAAMMEL DNNTKDKEEN FSFLLDRSAD DDETVTVALH 120 LGLPSPSSAD ADLISRLSSS TEMTDANKEE EVTVASGFPI SPLNKGQYWI PTPSQILIGP 180 TQFSCPLCFK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAAGCRNNI 240 DHPRAKPLKD FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG KLWYCTCGSD 300 FKHKRSLKDH IKAFGQGHAP YGIDCFDEED EPDSEIEQDN VSLH

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MSDPYSNYFN GWFNPNPVHH FSSSTSSSNP PFHCPFGFNL YPNDINSYYH SSLPSPPSPP  60
LREALPLLSL SPIRPEPQER DSSCAAMMEL DNNTKDKEEN FSFLLDRSAD DDETVTVALH  120
LGLPSPSSAD ADLISRLSSS TEMTDANKEE EVTVASGFPI SPLNKGQYWI PTPSQILIGP  180
TQFSCPLCFK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAAGCRNNI  240
DHPRAKPLKD FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG KLWYCTCGSD  300
FKHKRSLKDH IKAFGQGHAP YGIDCFDEED EPDSEIEQDN VSLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-132	C2H2 family protein