PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028078337.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 208aa MW: 24468.9 Da PI: 9.3481

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028078337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.1	5.3e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skRrngilKKA+E+ vLCda+v++++f+s+gk++e++s XP_028078337.1 9 KRIENTSNRQVTYSKRRNGILKKAKEITVLCDAKVSLVVFGSSGKMHEFCS 59 79***********************************************96 PP
2	K-box	76.7	6.2e-26	71	170	1	100
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 y+++sgk+l++ak+e+l++el+++kke+++Lq e+Rhl+Ged++sL+ ++L+ +e+ Le++l+++R k++e+ +++ ++ ++ e+++++ n L+ XP_028078337.1 71 YHQQSGKRLWDAKHENLSNELDRIKKENDSLQIELRHLKGEDITSLQPRDLMAIENTLETGLESVRYKQSEIHRMMKKNGKMLEEDNKQLNLILH 165 7899******************************************************************************************* PP K-box 96 kklee 100 ++ +e XP_028078337.1 166 QQEME 170 99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence
MGRGKIEIKR IENTSNRQVT YSKRRNGILK KAKEITVLCD AKVSLVVFGS SGKMHEFCSP 60 STTLVDILEK YHQQSGKRLW DAKHENLSNE LDRIKKENDS LQIELRHLKG EDITSLQPRD 120 LMAIENTLET GLESVRYKQS EIHRMMKKNG KMLEEDNKQL NLILHQQEME RESRELENGY 180 HRQVNDYQPQ MPFTFRVQPI QPNLHERI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	1e-85	MIKC_MADS family protein