PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028078083.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

SBP

Protein Properties

Length: 371aa MW: 39680.6 Da PI: 8.4062

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028078083.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	139.7	8.1e-44	78	153	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+adls+ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ XP_028078083.1 78 RCQVEGCNADLSDAKAYYSRHKVCGMHSKSPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 153 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MEMGSSSSSS SNSSDSLNGL KFGQKIYFED LGIGAPPKSG GGSSSSSAVA AAVSVGSVPS 60 TPPKKGRSGA VHGGQPPRCQ VEGCNADLSD AKAYYSRHKV CGMHSKSPKV IVAGLEQRFC 120 QQCSRFHQLP EFDQGKRSCR RRLAGHNERR RKPPPGSLLS SRYGRLSSSV FENSRGGGFL 180 MDFNTYPRLT GRDPWPTTRT SDRISGNQPT ATGKFLPHPW QSESENPPSN LFLHGSASGS 240 SYSGSTIPPG ECFTGVTDSG CALSLLSNQP WGSRDQPPLS LGVNNFVNTD GTHVVQSTAT 300 THGTAVDHFS STSWAFKGNE TSTSLHETMT SDLGLRQMSQ PGNNQYSGEL ELELEHSGAY 360 DSSTQHMHWS L

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MEMGSSSSSS SNSSDSLNGL KFGQKIYFED LGIGAPPKSG GGSSSSSAVA AAVSVGSVPS  60
TPPKKGRSGA VHGGQPPRCQ VEGCNADLSD AKAYYSRHKV CGMHSKSPKV IVAGLEQRFC  120
QQCSRFHQLP EFDQGKRSCR RRLAGHNERR RKPPPGSLLS SRYGRLSSSV FENSRGGGFL  180
MDFNTYPRLT GRDPWPTTRT SDRISGNQPT ATGKFLPHPW QSESENPPSN LFLHGSASGS  240
SYSGSTIPPG ECFTGVTDSG CALSLLSNQP WGSRDQPPLS LGVNNFVNTD GTHVVQSTAT  300
THGTAVDHFS STSWAFKGNE TSTSLHETMT SDLGLRQMSQ PGNNQYSGEL ELELEHSGAY  360
DSSTQHMHWS L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	6e-48	SBP family protein