PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028077819.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 557aa MW: 61045.6 Da PI: 8.205

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028077819.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.3e-16	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l++av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l XP_028077819.1 59 KGGWTPEEDDTLKRAVAVFKGKCWKKIAEFFP-DRSEVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	61.1	2.3e-19	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v ++G+ W+ Ia+ ++ gR +kqc++rw+++l XP_028077819.1 111 KGPWTQEEDDKIIELVSKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157 79****************************.***********97 PP
3	Myb_DNA-binding	48.7	1.7e-15	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++W eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ XP_028077819.1 163 KDAWMLEEELALMNAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MAEVKIEEPC LENKQSAAAS SSSVSEGSGS VTLKSPEICS PTATSPSHRR TTGPIRRAKG 60 GWTPEEDDTL KRAVAVFKGK CWKKIAEFFP DRSEVQCLHR WQKVLNPELV KGPWTQEEDD 120 KIIELVSKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWMLEE ELALMNAHRI 180 HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGN LPPVAKNGIQ NGVKDTSRTA 240 STGKMLVCSN KGSDSTAQTS SGTTDVCKIE DDSKDLESST PVQDMVASSS APANKSVDSE 300 VVKCNSLSSD INLRSSDSNI VQKFERCRTN GDIDQDEAIG TSLQFEIPTY GSLYYEPPQL 360 ESSVPSDSDL LKMSWMRESK SSPITSPISF FTPPCVKSGG LCRQSPESIL KIAAKTFPNT 420 PSILRKRRTE AQTPMSSKKI GKASGEEIQV GSRSSDEQEQ TTNHLENLGL RDESLNVSPA 480 CLGNGTTGLC NGKAFNASPP YRLRSQRTAI SKSVEKQLEF AFDKAHQDGN NKSVDSIEEG 540 NPPLNKDCSH ASKMGVT

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MAEVKIEEPC LENKQSAAAS SSSVSEGSGS VTLKSPEICS PTATSPSHRR TTGPIRRAKG  60
GWTPEEDDTL KRAVAVFKGK CWKKIAEFFP DRSEVQCLHR WQKVLNPELV KGPWTQEEDD  120
KIIELVSKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWMLEE ELALMNAHRI  180
HGNKWAEIAK VLPGRTDNAI KNHWNSSLKK KLDFYLATGN LPPVAKNGIQ NGVKDTSRTA  240
STGKMLVCSN KGSDSTAQTS SGTTDVCKIE DDSKDLESST PVQDMVASSS APANKSVDSE  300
VVKCNSLSSD INLRSSDSNI VQKFERCRTN GDIDQDEAIG TSLQFEIPTY GSLYYEPPQL  360
ESSVPSDSDL LKMSWMRESK SSPITSPISF FTPPCVKSGG LCRQSPESIL KIAAKTFPNT  420
PSILRKRRTE AQTPMSSKKI GKASGEEIQV GSRSSDEQEQ TTNHLENLGL RDESLNVSPA  480
CLGNGTTGLC NGKAFNASPP YRLRSQRTAI SKSVEKQLEF AFDKAHQDGN NKSVDSIEEG  540
NPPLNKDCSH ASKMGVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-168	MYB family protein