PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028077801.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 466aa MW: 50833.8 Da PI: 8.1092 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.9 | 6.2e-12 | 49 | 74 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG++CkF+H+ XP_028077801.1 49 PGEPDCIYYLRTGLCGYGSNCKFNHP 74 5789*********************9 PP | |||||||
2 | zf-CCCH | 33.8 | 5.7e-11 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++ +tGtCkyG++Ck++H++ XP_028077801.1 96 QPDCGYYIKTGTCKYGSTCKYHHPR 120 789********************96 PP | |||||||
3 | zf-CCCH | 38.5 | 1.9e-12 | 141 | 165 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tG Ck+G CkF+H++ XP_028077801.1 141 EKPCPFYMKTGLCKFGIACKFNHPQ 165 689********************97 PP | |||||||
4 | zf-CCCH | 28.2 | 3.3e-09 | 290 | 315 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tG CkyG Ck++H++ XP_028077801.1 290 DQPECRHYMSTGSCKYGFDCKYNHPR 315 689*********************96 PP | |||||||
5 | zf-CCCH | 33 | 9.9e-11 | 336 | 361 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ +G CkyG++CkF H++ XP_028077801.1 336 GQAVCSYYNLYGLCKYGPTCKFDHPM 361 7899********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence |
MPDNRQVQSN GGVSNSSPNN LEEAIRRFNI HPNGIQDSGA TANSYPDRPG EPDCIYYLRT 60 GLCGYGSNCK FNHPTSSSGQ VQGGQYKGEL PERVGQPDCG YYIKTGTCKY GSTCKYHHPR 120 DRHGAAPVQM NILGLPLRQQ EKPCPFYMKT GLCKFGIACK FNHPQPASAG TVFPIPGSAA 180 YGSSGSTVVS SSGLHYVGGV SASSLPKTPY LSGPRAQGPQ TYMPVVVSPS QGIAPAHVWN 240 TYMGCMSHVS STSYLGSDFV YNSKNQGESG SIGMVHMLPT SIPHLPERPD QPECRHYMST 300 GSCKYGFDCK YNHPRERIAQ LATNSLGPLG LPLRPGQAVC SYYNLYGLCK YGPTCKFDHP 360 MTGYPYNYGL SYLLCSIRPQ VWKELRDSRR NEATVLDFLG ELEAHQIAQQ TETSPSKPSK 420 VPDWVRKSES ASNKNHNLDT ENSSEHAGSP PHPTPISSEL PHDHSD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-105 | C3H family protein |