PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028077769.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 351aa    MW: 37869.9 Da    PI: 5.9966
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028077769.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.54.1e-192063144
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    k+ie+ snrqvtfskRr+g++KKA+ L++L +ae+a+++ s+  
  XP_028077769.1 20 KKIESVSNRQVTFSKRRAGLFKKASQLCILSGAEIAIVVKSPGK 63
                    68*************************************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MVTMNTTKTT TQGRRKIEIK KIESVSNRQV TFSKRRAGLF KKASQLCILS GAEIAIVVKS  60
PGKRTFAFGQ PSVDAVIDRY LTGTSAAAEQ NNGPSVLDFN EKYAQVSKEL EAEKRRRAVI  120
EETKKAANDG RFWWDEAVDD LGLEELEQYV AALEELKKNV SMKADELMIM KANSSMMFGM  180
NESANHGGLG LMSDCATSMV PHGFDCANSS MMFGMNESAN HGGLRLMSDC ATSTVPHGFD  240
CANSSMMFGM NESANHGGLR LMSDCATSTV PHGFDCANSS MMFGMNESAN HGGLGLMSDC  300
ATSMVPHGFD CANSSMMFGM NESANHGGLG LMSDCATSMI PHGFDFGRGQ F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-42M-type_MADS family protein