PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028077762.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 412aa MW: 46404.1 Da PI: 9.7292

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028077762.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45	2.6e-14	72	131	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg + +e Aa+a++ a+ k++g XP_028077762.1 72 SRFRGVSRHRWTGRFEAHLWDkGSWNAtqrKKgKQVYLGAYNVEETAARAYDLAAIKYWG 131 789****************999988876447***********************98 PP
2	AP2	50.6	4.7e-16	174	225	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_028077762.1 174 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 225 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MGMVTTVKSE MRPLKHHLCS MEAHPPVAVK SVKRHKRESC AFVIGEQAQP QPQPQPGQVF 60 PSTTTTGLKK SSRFRGVSRH RWTGRFEAHL WDKGSWNATQ RKKGKQVYLG AYNVEETAAR 120 AYDLAAIKYW GPTTFTNFPV SDYETEMEIM QNVTKEEYLA SLRRRSSGFS RGVSKYRGVA 180 RHHHNGRWEA RIGRVFGNKY LYLGTYSTQE EAAHAYDIAA IEYRGINAVT NFDLSTYIRW 240 LRPGLNSLAP QDHPTQQMET QPINPSSTCI LGNQPGFTFH FNPYTARDLG TGTGTTMTPQ 300 KFEILETKMP VSPCNKSSTS PTALGLLFRS SMFREMVEKN SSVTDYDTDK NEKKQSEAGA 360 IDEFGGRFYN NMGSVEYGSS SSTLTGFQEE NTLPLYTKTG HSLWNGALKF AF

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MGMVTTVKSE MRPLKHHLCS MEAHPPVAVK SVKRHKRESC AFVIGEQAQP QPQPQPGQVF  60
PSTTTTGLKK SSRFRGVSRH RWTGRFEAHL WDKGSWNATQ RKKGKQVYLG AYNVEETAAR  120
AYDLAAIKYW GPTTFTNFPV SDYETEMEIM QNVTKEEYLA SLRRRSSGFS RGVSKYRGVA  180
RHHHNGRWEA RIGRVFGNKY LYLGTYSTQE EAAHAYDIAA IEYRGINAVT NFDLSTYIRW  240
LRPGLNSLAP QDHPTQQMET QPINPSSTCI LGNQPGFTFH FNPYTARDLG TGTGTTMTPQ  300
KFEILETKMP VSPCNKSSTS PTALGLLFRS SMFREMVEKN SSVTDYDTDK NEKKQSEAGA  360
IDEFGGRFYN NMGSVEYGSS SSTLTGFQEE NTLPLYTKTG HSLWNGALKF AF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	8e-81	AP2 family protein