PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028077620.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 510aa MW: 55721.7 Da PI: 9.2769

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028077620.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	64	86	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_028077620.1 64 FVCEICNKGFQRDQNLQLHRRGH 86 89*******************88 PP
2	zf-C2H2	11.8	0.00072	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_028077620.1 141 WKCEKCSKKYAVQSDWKAHSKIC 163 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MMSDYGISPI LPIIHGFSQE PNTNPNPNLS TNQAKRKRNL PGTPDPDAEV IALSPKSLMA 60 TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRSNKEV IRKKVYICPE KNCVHHDPSR 120 ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KICGTKEYKC DCGTIFSRKD 180 SFITHRAFCD ALAEESTRFI SIPTPTNFNF RADELMNGTI GNLQAAGVSG NPQFPSVFRP 240 DLVGLETGQL NMDGHKPRLP LWLDHGNSHP NNPIGMPSNS MGLPEVVQTA QWLNRSQESP 300 FSGGNLSQLA ALGLVLKEEQ ENNGNLSETV SNSTSYYNNH NQTQNQIQQE APAHMSATAL 360 LQKAAQMGST RNSSLFNNRF GLVSSSSSPS LSNVASFNQM MMMRQQNLAE NLNGFMNTST 420 GGGGGDGLLL LGDNMNSSSS AMEANNTRNL IMVSKPSCNE AEGSMTRDFL GVGGGGGGGG 480 GGALLRREIA KFGSMGAVMD LSQQYRSGSH

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MMSDYGISPI LPIIHGFSQE PNTNPNPNLS TNQAKRKRNL PGTPDPDAEV IALSPKSLMA  60
TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRSNKEV IRKKVYICPE KNCVHHDPSR  120
ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHS KICGTKEYKC DCGTIFSRKD  180
SFITHRAFCD ALAEESTRFI SIPTPTNFNF RADELMNGTI GNLQAAGVSG NPQFPSVFRP  240
DLVGLETGQL NMDGHKPRLP LWLDHGNSHP NNPIGMPSNS MGLPEVVQTA QWLNRSQESP  300
FSGGNLSQLA ALGLVLKEEQ ENNGNLSETV SNSTSYYNNH NQTQNQIQQE APAHMSATAL  360
LQKAAQMGST RNSSLFNNRF GLVSSSSSPS LSNVASFNQM MMMRQQNLAE NLNGFMNTST  420
GGGGGDGLLL LGDNMNSSSS AMEANNTRNL IMVSKPSCNE AEGSMTRDFL GVGGGGGGGG  480
GGALLRREIA KFGSMGAVMD LSQQYRSGSH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	104	KLKQRSNKEVIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-105	C2H2 family protein