PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028077552.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARR-B

Protein Properties

Length: 552aa MW: 61590.7 Da PI: 5.4701

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028077552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86.8	2.1e-27	313	366	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k +++WtpeLH++Fv+av++L G ++A+P++ilelmkv+gLt+++v+SHLQkYR+ XP_028077552.1 313 KMKVDWTPELHKKFVQAVDKL-GVDQAIPSRILELMKVDGLTRHNVASHLQKYRM 366 5689***************.******************************8 PP
2	Myb_DNA-binding	41.4	3.4e-13	316	365	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e+++++v+av +lG + +++I + m g+t+ ++ s++qky+ XP_028077552.1 316 VDWTPELHKKFVQAVDKLGVDqaIPSRILELMKvDGLTRHNVASHLQKYR 365 57***********************************************7 PP
3	Response_reg	27.5	1.6e-10	20	126	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+ d++ + + lr le+ +y +v + d +eal+ + +k +++ ++ ++ +++G + e ++ +lp i+ + ++ +++ +++ +G XP_028077552.1 20 VLLLDEDSSSAAELRLKLEEMNY-IVSMFCDEDEALTAISDKPesFHVAIVEVSTGNSHGRFKFLEVAT---DLPTIMTSNTQCLTTMMKCITLG 110 79999999*************.***********777767*********99644433333...89***************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl Kp + ++l++ XP_028077552.1 111 AVEFLLKPLSDDKLRN 126 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MVCTANDLLG WTDFPKGLRV LLLDEDSSSA AELRLKLEEM NYIVSMFCDE DEALTAISDK 60 PESFHVAIVE VSTGNSHGRF KFLEVATDLP TIMTSNTQCL TTMMKCITLG AVEFLLKPLS 120 DDKLRNIWQH VVHKAFNAGG KDLSESLKPV KESMVSMLRL QLENGEPMSG ISVKEEHETV 180 VEENKEEHDK YPAPPTPQLE QGVRLVDDGD CQDQINCLTE KEGGDQDGEY KSVDTTCENL 240 DAETTVWEIP PQISEVAVIK DEDESLDGCK SESNVSSRLE NKDGPSDSGG DAANLNKASG 300 VRNSCGNKAN RKKMKVDWTP ELHKKFVQAV DKLGVDQAIP SRILELMKVD GLTRHNVASH 360 LQKYRMQRRH ILPKEVERRW PHPRDPSQRS YHPHKPVMAF PPYHSNPTLP AAQVYPAWGP 420 PRSYASGVQM WGPAFYPPWQ PTESWHWKPY PGMHADAWGC PVMPPPPPHG PYPSFPQNAN 480 GFNNAYATHS SYMMPPSSVD LQAADEVIDK VVKEAINKRW LPLPIGLKPP STDSVLTELS 540 RQGISTIPPH LI

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MVCTANDLLG WTDFPKGLRV LLLDEDSSSA AELRLKLEEM NYIVSMFCDE DEALTAISDK  60
PESFHVAIVE VSTGNSHGRF KFLEVATDLP TIMTSNTQCL TTMMKCITLG AVEFLLKPLS  120
DDKLRNIWQH VVHKAFNAGG KDLSESLKPV KESMVSMLRL QLENGEPMSG ISVKEEHETV  180
VEENKEEHDK YPAPPTPQLE QGVRLVDDGD CQDQINCLTE KEGGDQDGEY KSVDTTCENL  240
DAETTVWEIP PQISEVAVIK DEDESLDGCK SESNVSSRLE NKDGPSDSGG DAANLNKASG  300
VRNSCGNKAN RKKMKVDWTP ELHKKFVQAV DKLGVDQAIP SRILELMKVD GLTRHNVASH  360
LQKYRMQRRH ILPKEVERRW PHPRDPSQRS YHPHKPVMAF PPYHSNPTLP AAQVYPAWGP  420
PRSYASGVQM WGPAFYPPWQ PTESWHWKPY PGMHADAWGC PVMPPPPPHG PYPSFPQNAN  480
GFNNAYATHS SYMMPPSSVD LQAADEVIDK VVKEAINKRW LPLPIGLKPP STDSVLTELS  540
RQGISTIPPH LI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-144	ARR-B family protein