PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028077505.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 248aa    MW: 28922.9 Da    PI: 9.2322
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028077505.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.45.9e-161051243
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     i n+  r+ t+ kR++g+ KK  EL +LCd++v++ii++++
  XP_028077505.1 10 LIRNEKARYATYQKRKKGLKKKTCELQTLCDVQVCLIIYGPK 51
                    699*************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGRAKQRMKL IRNEKARYAT YQKRKKGLKK KTCELQTLCD VQVCLIIYGP KLDDNSTEVE  60
IWPQNPNDIQ RLIDTYRNQS IKDRHRRTLD LSNFFENRNQ EIEDALVKLR KKNDKALYST  120
WDDRYNDLPE GQLRAFEGML EGKLADVKAR VEFMKGTRAL ASLNDMEQTT QQNHSNYFMQ  180
GPMMMPMNNI NDTHYTQLGE SVLTRVSCTE SSFSMSRMME NEVGKNHHPS PSMAYYGGSS  240
MQTMSPYM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-19M-type_MADS family protein