PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028076704.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Protein Properties

Length: 388aa MW: 44790.4 Da PI: 6.3994

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028076704.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.5	7.7e-11	105	199	2	83
EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE......EEETTE..........EEE-TTHHHHHHHHT--TT- CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy....rkksgr..........yvltkGWkeFvkangLkegD 78 + +lt sd g l++p k a++h + ++ + +++ d+++ W +kl+y + + +++t+GW++Fv+ +gLk+ D XP_028076704.1 105 ELQLTCSDIEC-GKLTIPVKTASSHfpstTLTSNFEYPIVISDTQNDIWYMKLTYykdlQ----EhaskfactfkFMITSGWQGFVDWHGLKAMD 194 55665555555.56*********9999555667778*************77662....333335777999*************** PP EEEEE CS B3 79 fvvFk 83 ++ F+ XP_028076704.1 195 VIHFY 199 **9 PP
2	B3	47.7	2.8e-15	250	337	1	86
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+ +ltpsdv grl +p + ae+h +++ + ++ + d+++ W + liy+ g++v+t+GW +Fv ++L++ D++ F+ + XP_028076704.1 250 FDVQLTPSDVEH-GRLFVPVERAEKHfppvlTHEPYYEHQIEISDTQNHNWHMSLIYNSLEGAFVITRGWHRFVVRHNLEAMDVISFY--K 337 778898888875.67999*********995555566689999*****************************************9..2 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MSESRDNDDK EGKRKKKSDV QQEEQVSKGG SASSSTPLME TATQTEGSGE GNVHLPFHKL 60 TTHYDHDDVI SQSKSGAAIN RRDDFSLSNI ARLGEFKRMG HFLFELQLTC SDIECGKLTI 120 PVKTASSHFP STTLTSNFEY PIVISDTQND IWYMKLTYYK DLQEHASKFA CTFKFMITSG 180 WQGFVDWHGL KAMDVIHFYR PFPRLHMKHY LIDYVKAEGN IVSPSKNSCM KQVGVEACDE 240 VDFYRRIFLF DVQLTPSDVE HGRLFVPVER AEKHFPPVLT HEPYYEHQIE ISDTQNHNWH 300 MSLIYNSLEG AFVITRGWHR FVVRHNLEAM DVISFYKHPS RLHNRHFLIQ NVKAGELETE 360 NPPEFMPENF LFEVQFVELA TDSGGHPM

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MSESRDNDDK EGKRKKKSDV QQEEQVSKGG SASSSTPLME TATQTEGSGE GNVHLPFHKL  60
TTHYDHDDVI SQSKSGAAIN RRDDFSLSNI ARLGEFKRMG HFLFELQLTC SDIECGKLTI  120
PVKTASSHFP STTLTSNFEY PIVISDTQND IWYMKLTYYK DLQEHASKFA CTFKFMITSG  180
WQGFVDWHGL KAMDVIHFYR PFPRLHMKHY LIDYVKAEGN IVSPSKNSCM KQVGVEACDE  240
VDFYRRIFLF DVQLTPSDVE HGRLFVPVER AEKHFPPVLT HEPYYEHQIE ISDTQNHNWH  300
MSLIYNSLEG AFVITRGWHR FVVRHNLEAM DVISFYKHPS RLHNRHFLIQ NVKAGELETE  360
NPPEFMPENF LFEVQFVELA TDSGGHPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	2e-12	RAV family protein