PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028076441.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 711aa MW: 79047.4 Da PI: 6.7339

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028076441.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	7.7e-07	116	140	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 lC+ ar+G C+y d+C+F+H+ XP_028076441.1 116 LCPEVARSGdvtSCPYSDKCRFSHD 140 8***********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence
MKHISATPLL LSTEETLHRR EASSTGMDLS TAEEAPSDGG VVAEKTAEEL VAKAIAPVKK 60 EFLRPPPIRP STSNHLTNAV ASNSNSNSNS NLLKEKKSKR QLKRERLQEK KSALHLCPEV 120 ARSGDVTSCP YSDKCRFSHD VEAFKALKPA DIQGDCPFLS TEGPCPYGMA CRFSSTHKDD 180 FTAEALNGQK KSSEMNGLNK DVQKLLWKNK MKFPKADAQL KLLGLLVKMN SKHEKLSDKE 240 ESDQTTSNGS PATEVNSCEV AGNSNNNVDN PPQLPEKDDC ADGTFASDEL RPLKKAKSSA 300 DENHSSNELN NGDSVLAKDV EESCPQAESG TTTDCIPAET DGSLKLHPRE KKLIDFREKL 360 YLAPLTTVGN LPFRRVCKVL GADVTCGEMA MCTNLLQGQA SEWALLRRHS SEDLFGVQIC 420 GAYPDTVTRA VELVNQECTV DFIDINMGCP IDIVVNKGAG SALLTKPMRM KSIIQAASTT 480 VDRPITVKVR TGYFEGRRRI DSLIEDIGQW GASAVTIHGR SRQQRYSKLA DWEYIYQCAR 540 KAPDTLQVLG NGDVFSYLDW NQNKSSCPEL STCMIARGAL IKPWIFTEMK EQRTWDISSG 600 ERLNILKDYI RFGLEHWGSD AKGVETTRYF LLEWLSYTHR YIPVNLLDVI PQRLNWRPPS 660 YFGRDDLETL MASESAADWI RISEMLLGKV PDGFTFTPKH KSNSYDRAEN G

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence

MKHISATPLL LSTEETLHRR EASSTGMDLS TAEEAPSDGG VVAEKTAEEL VAKAIAPVKK  60
EFLRPPPIRP STSNHLTNAV ASNSNSNSNS NLLKEKKSKR QLKRERLQEK KSALHLCPEV  120
ARSGDVTSCP YSDKCRFSHD VEAFKALKPA DIQGDCPFLS TEGPCPYGMA CRFSSTHKDD  180
FTAEALNGQK KSSEMNGLNK DVQKLLWKNK MKFPKADAQL KLLGLLVKMN SKHEKLSDKE  240
ESDQTTSNGS PATEVNSCEV AGNSNNNVDN PPQLPEKDDC ADGTFASDEL RPLKKAKSSA  300
DENHSSNELN NGDSVLAKDV EESCPQAESG TTTDCIPAET DGSLKLHPRE KKLIDFREKL  360
YLAPLTTVGN LPFRRVCKVL GADVTCGEMA MCTNLLQGQA SEWALLRRHS SEDLFGVQIC  420
GAYPDTVTRA VELVNQECTV DFIDINMGCP IDIVVNKGAG SALLTKPMRM KSIIQAASTT  480
VDRPITVKVR TGYFEGRRRI DSLIEDIGQW GASAVTIHGR SRQQRYSKLA DWEYIYQCAR  540
KAPDTLQVLG NGDVFSYLDW NQNKSSCPEL STCMIARGAL IKPWIFTEMK EQRTWDISSG  600
ERLNILKDYI RFGLEHWGSD AKGVETTRYF LLEWLSYTHR YIPVNLLDVI PQRLNWRPPS  660
YFGRDDLETL MASESAADWI RISEMLLGKV PDGFTFTPKH KSNSYDRAEN G