PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028076229.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 545aa    MW: 60790.6 Da    PI: 5.6002
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028076229.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS317.23.6e-971865442374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     v+ L+++A++++s++l+la+ +Larl++  +sp+g+p+qR+a+yf+eAL++ l++      ++ p++++++++++++++a+k fs+vsPi+ fs+
  XP_028076229.1 186 VDELIRAADCFESNELQLAHVILARLNQKlQSPAGKPLQRVAFYFKEALQTMLTG------STSPTRPSDSSEVVQAIKAHKNFSNVSPIVMFSN 274
                     678************************999*************************......777888999899********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa....sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +taNqaIlea++g++ +H++Dfdi+ G+QW++++++ a    sR++++p lRiT+++++e   + e + ++++L++fA+el++ fe++++  +++
  XP_028076229.1 275 FTANQAILEALDGSKFIHVVDFDIGFGGQWASFMKEVAdsaeSRKSNTPVLRITAIVPEE--YAVESRLVRDNLNHFASELKIVFEIDFVSIRTF 367
                     *************************************9655567799***********66..99999***********************9**** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.adh..nsesFlerflealeyysalfdsl.eaklpr 277
                     e l++e+++  +gE++aV l+  +++ +           ++L+ ++++sP+vvv+v+ e + +  +++sF + ++e le+ys++++s+ +a+++ 
  XP_028076229.1 368 EILSFEAIKSMEGEKTAVVLSPIIFQRM-----G----VKFLNDLRQISPHVVVIVDGEgLTYggGAPSFRRSVIEGLEFYSTVLESVeAASVGG 453
                     ******************9999888886.....2....46*******************534444677********************7677766 PP

            GRAS 278 es.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                        ++ + +E ++++++i  +v ++g++       +  Wre++ +aG+++v ls++a  qa++llrk + +g++v ++++++vl+W+drpLv++S
  XP_028076229.1 454 GGeDWIRRIEMFMMRPKIFAAVEAAGRR-------APPWREAFAAAGLRAVGLSQFADFQADCLLRKAQLRGFHVAKQQAEMVLCWQDRPLVATS 541
                     55588899******************98.......89********************************************************** PP

            GRAS 372 aWr 374
                     aWr
  XP_028076229.1 542 AWR 544
                     **8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    
MKVPFISAQS HQSSNNKQQN SSARNTRFNS STADTNNLCY EPKSVLDLRR SQSPISSVAV  60
ADKKVPKSGF SDALLQSEDG SVQWEDDQIL NNFEEWDSLM RELGLHDDSC APALKSIVPQ  120
FDHSETQFPV LLPDFPLSHS FDSTHTHFGL SEVSSNQNLN QNFNSFDLCS DFHHMNHWNN  180
DGFNFVDELI RAADCFESNE LQLAHVILAR LNQKLQSPAG KPLQRVAFYF KEALQTMLTG  240
STSPTRPSDS SEVVQAIKAH KNFSNVSPIV MFSNFTANQA ILEALDGSKF IHVVDFDIGF  300
GGQWASFMKE VADSAESRKS NTPVLRITAI VPEEYAVESR LVRDNLNHFA SELKIVFEID  360
FVSIRTFEIL SFEAIKSMEG EKTAVVLSPI IFQRMGVKFL NDLRQISPHV VVIVDGEGLT  420
YGGGAPSFRR SVIEGLEFYS TVLESVEAAS VGGGGEDWIR RIEMFMMRPK IFAAVEAAGR  480
RAPPWREAFA AAGLRAVGLS QFADFQADCL LRKAQLRGFH VAKQQAEMVL CWQDRPLVAT  540
SAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-148GRAS family protein