PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028076078.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 218aa    MW: 24949.3 Da    PI: 9.0381
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028076078.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.48.1e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr g++KKA+ELS+LCdae+a+i+fs tg+l+ey+s
  XP_028076078.1  9 KKIDNVTARQVTFSKRRRGLFKKAHELSTLCDAEIALIVFSATGRLFEYAS 59
                    68***********************************************86 PP
2K-box41.94.4e-15951712399
           K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      L ke e+   e+R+l Ge+L++L ++eL++Le+ Le +l+++ ++K++ + ++i  l++ke +l een  L+++++
  XP_028076078.1  95 MLSKEAEERTLELRQLRGEELHELGFEELKKLEKSLEGGLSRVLKTKDDRVEKEIAALRRKEARLMEENAWLKQQVQ 171
                     5666666667789*************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MVRQRIQIKK IDNVTARQVT FSKRRRGLFK KAHELSTLCD AEIALIVFSA TGRLFEYASS  60
STRQVIERHN LQPQNLVQLN QPSLELQLEN STRAMLSKEA EERTLELRQL RGEELHELGF  120
EELKKLEKSL EGGLSRVLKT KDDRVEKEIA ALRRKEARLM EENAWLKQQV QMQIVNMGQP  180
QEQGQSSESI TNNGSTVAPP QDYDSSDTSL KLGLPYQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-57MIKC_MADS family protein