PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028075340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 121aa MW: 13540.8 Da PI: 10.493 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.4 | 3.9e-13 | 18 | 50 | 8 | 40 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviif 40 n q +f kRr ++KKA+ELS+ C++evav+++ XP_028075340.1 18 NSQLSFLKRRFSLFKKANELSTHCGIEVAVMLV 50 7899**************************876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence |
MENKNKGGKK SKLVRLNNSQ LSFLKRRFSL FKKANELSTH CGIEVAVMLV LQRNPSVDEL 60 RLGTARKNEA LFGASIEELS LEQLKELKAK LMEVREKVTN KLVELLKEAN GGGGFEIAHG 120 F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-08 | M-type_MADS family protein |