PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028075140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 24764.1 Da PI: 6.9834 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101.2 | 9.5e-32 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++p+++r+ +++sl++eA+ r+ +Pv+Gavg++++++++l+q+ XP_028075140.1 2 SCNGCRVLRKGCSENCILRPCLqwidsPESQGHATVFVAKFFGRAGLMSFISSVPPNQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHLCQA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 +++++l+ XP_028075140.1 97 AVQTVLR 103 *998876 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence |
MSCNGCRVLR KGCSENCILR PCLQWIDSPE SQGHATVFVA KFFGRAGLMS FISSVPPNQR 60 PSLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHLCQAAVQT VLRGGALRPI PEFFGGAVLT 120 PPDLDEASEA EVTCSDMFKL YHHQDPNPDS RSKAAPKRRR IGDELENLGL SLTPSSSEAV 180 VGRVLNFWSS PEKLRPGTPS MNSEESGTTT LHESGGFGDQ TKLLNLFT |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 157 | 161 | KRRRI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49940.1 | 5e-84 | LBD family protein |