PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028074784.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 865aa MW: 95603.4 Da PI: 4.7335

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028074784.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	291	310	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C G++C+F H XP_028074784.1 291 ICDFFAK-GWCIKGNSCRFLH 310 8****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 865 aa Download sequence
MPSAAAAAAA ATPDGHRPHH HHSPASGDQS HEGSDIGMDN DDDDVEYEEI EEEVEVEEEV 60 EEEVEVEEEI EEEEVEEEEE EVEEEEEMEE EVEEGEEIGE DLSDSPIDED QNDVSQGMES 120 KGHEEHLRSG SSDPEKSVVN LPADSLAVEG GIDNSKFSGA GETRQKGEST VNVEDPKSPN 180 MGIHQVASKD DGLLEFVGDK KDSGDFPKMI TPKDDDVCND GKASQRDSGI MTAETTKPFN 240 VSEIKQIGTQ SQEDINQGPT RFSRLAVPQV RPRSLSPLAG YNDGSKRPAV ICDFFAKGWC 300 IKGNSCRFLH IKDDINNICQ KPEGDVATLN EKSELQADGG LRDGTERSES ADFPNAAASS 360 AARSSSFSLE RTSSWEHGKS PRWHGVSEKH KILSLQREDL SRGVSPDSLQ SPVYKDKARS 420 TSSFKDVGRE NLTHNWSSDD YPISRNSCFP EQRSLANNSV ISSDTYRSTV IPSHATSFED 480 MAARRSQFML HDRSSPGLSR SPNLSLSPSI QTAGILPSQH IPAWTRSSFS FSSLGTDSLG 540 APKHSDSDRE YHASRSSSWL QSSLRFSGSE SENLSVTNVS GGPLPISGHR TKISSNDWEP 600 SVRFRSSFFI PQSPSSPGSL YDPIRDSIEQ PNLGDGFSKL SSTHEKSVTN THLIMDGDPA 660 LTRSLGPECG SYKHSISGHH EVHDNMLDKN FHGKNLFRTE GEAMRISHDE QKNKNTLPKE 720 EKLLTPAYAK DITEANKINL ESDLRLRKDG LRHKNELKVD NGRQSNEMDV DLKTDWEQKE 780 SKALKHFRAA LIDFVKELVK PAWREGHLSK DAHKVIVKKA VDKVLSTTQP HQAPNTAESI 840 QQYLDASQQK ISKLVEGYVV KYGKS

Sequence ? help Back to Top

Protein Sequence Length: 865 aa Download sequence

MPSAAAAAAA ATPDGHRPHH HHSPASGDQS HEGSDIGMDN DDDDVEYEEI EEEVEVEEEV  60
EEEVEVEEEI EEEEVEEEEE EVEEEEEMEE EVEEGEEIGE DLSDSPIDED QNDVSQGMES  120
KGHEEHLRSG SSDPEKSVVN LPADSLAVEG GIDNSKFSGA GETRQKGEST VNVEDPKSPN  180
MGIHQVASKD DGLLEFVGDK KDSGDFPKMI TPKDDDVCND GKASQRDSGI MTAETTKPFN  240
VSEIKQIGTQ SQEDINQGPT RFSRLAVPQV RPRSLSPLAG YNDGSKRPAV ICDFFAKGWC  300
IKGNSCRFLH IKDDINNICQ KPEGDVATLN EKSELQADGG LRDGTERSES ADFPNAAASS  360
AARSSSFSLE RTSSWEHGKS PRWHGVSEKH KILSLQREDL SRGVSPDSLQ SPVYKDKARS  420
TSSFKDVGRE NLTHNWSSDD YPISRNSCFP EQRSLANNSV ISSDTYRSTV IPSHATSFED  480
MAARRSQFML HDRSSPGLSR SPNLSLSPSI QTAGILPSQH IPAWTRSSFS FSSLGTDSLG  540
APKHSDSDRE YHASRSSSWL QSSLRFSGSE SENLSVTNVS GGPLPISGHR TKISSNDWEP  600
SVRFRSSFFI PQSPSSPGSL YDPIRDSIEQ PNLGDGFSKL SSTHEKSVTN THLIMDGDPA  660
LTRSLGPECG SYKHSISGHH EVHDNMLDKN FHGKNLFRTE GEAMRISHDE QKNKNTLPKE  720
EKLLTPAYAK DITEANKINL ESDLRLRKDG LRHKNELKVD NGRQSNEMDV DLKTDWEQKE  780
SKALKHFRAA LIDFVKELVK PAWREGHLSK DAHKVIVKKA VDKVLSTTQP HQAPNTAESI  840
QQYLDASQQK ISKLVEGYVV KYGKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-40	C3H family protein