PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028074079.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 286aa    MW: 31202.3 Da    PI: 8.4836
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028074079.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.1e-0998119426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C+++ + G C+yGd+C++ H+
  XP_028074079.1  98 KVCNYWVQ-GSCSYGDKCRYLHS 119
                     68******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MDVEGNKRVF QRLGPSNDNR NQKVCYHWRA GKCDRFPCPY LHRELPRPQN GTASSKRPHG  60
FADDQPMVRR NPNNFGNSSS WGRAHGGGVA GKIVKTEKVC NYWVQGSCSY GDKCRYLHSW  120
CTGDCFSLLT QLEGHQKVVT GITMPSGSDK LYTGSKDETV RVWDCQSGQC AGVINLGGEV  180
GCMLSEGPWV FVGIPNVVKA WNIQTATDLS LTGPIGQVYA LVVGNDLLFA GTQDGTILAW  240
RFNAAANTFE PAATLKSHNL AVVTLVVGAN MLYSGSMDHS IRVSQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-136C3H family protein