PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028073423.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 335aa    MW: 34305.3 Da    PI: 10.0773
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028073423.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.53e-221662349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     en+sn qvtfskRr g++KKA+ELS+LC++ev +i+fs+  k y +
  XP_028073423.1 16 MENESNLQVTFSKRRSGLFKKASELSILCGVEVGIIVFSPGKKAYSF 62
                    69**************************************9998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MERKSKGRQK ITMTKMENES NLQVTFSKRR SGLFKKASEL SILCGVEVGI IVFSPGKKAY  60
SFGHPTVDMI IDRFLSRDAP LNSGTHQLVE AHRSACVRDL NLQLNHVQAL LDVEKQRGTA  120
LDQLRMAEGQ GEHRWWEGSV EEMNLPQLHQ FKAAMMQLRT KIGIRADRIL HEQPANSFGF  180
GVGPTSFGGG AGFHPGPSSF GGAGFLAGPS SFGGGGGNTA AGGGGFFAGL GGGGGTSFGG  240
GGGGFLDGRS SFGGGAGGSS FQARGGVGST FQAGPSFAGG GGIGALPFGA GLGSFGAGGG  300
GSDNNSIVPF DGRIPDTGGS KAPYGFNHGY GRGFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-53M-type_MADS family protein