PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028073416.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 543aa MW: 59947.6 Da PI: 4.6851

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028073416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	8e-18	36	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l XP_028073416.1 36 KGPWTSAEDAILVDYVNRHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 83 79******************************************9986 PP
2	Myb_DNA-binding	51.7	2.1e-16	89	132	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E++ ++++++++G++ W++ a++m+ gRt++++k++w++ XP_028073416.1 89 KGAFTPDEEKTIIELHAKMGNK-WARMAAEMP-GRTDNEIKNYWNT 132 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MTSDSEDKMS EDCMDSPSVE EASSIGKLGG GGLLKKGPWT SAEDAILVDY VNRHGEGNWN 60 AVQKHSGLSR CGKSCRLRWA NHLRPDLRKG AFTPDEEKTI IELHAKMGNK WARMAAEMPG 120 RTDNEIKNYW NTRIKRRHRA GLPIYPPDIS QALHENQQCQ NMGTFPMVET HHPDLLSTNS 180 FEIPLVEFKN LELDQQLYSP ALPDIPASGL LAQGLGSSHS DSLMFSMLHP PKRFRESRES 240 ECLIPCVNSS TADYFRAFDQ YPDDGCEKIT QLSSSILPGS HALLNGNFSS SEPMPWAMNP 300 ELPSLQYSDA QVGSWETGTP SSPLPSLDSV STLIQSPSTE QAQSDSLSRR NSGLLEAVLY 360 ESHTLKSSKN SFCDLTSNVS VVAGDAMDSL SQNLRETQWE IHSDPISPLG HSTSSVFSEC 420 TPISGSSFDE PHSVEIFPEC LAKQEAVDWV TTKCDVNEEN ANQMMFLRPD FLLASNWFGH 480 STERGREHSV LNDTRGTLLG EDFNGDCKQI STMSVSDSSC QKRGCGSCSW DDMSTACELS 540 ENL

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MTSDSEDKMS EDCMDSPSVE EASSIGKLGG GGLLKKGPWT SAEDAILVDY VNRHGEGNWN  60
AVQKHSGLSR CGKSCRLRWA NHLRPDLRKG AFTPDEEKTI IELHAKMGNK WARMAAEMPG  120
RTDNEIKNYW NTRIKRRHRA GLPIYPPDIS QALHENQQCQ NMGTFPMVET HHPDLLSTNS  180
FEIPLVEFKN LELDQQLYSP ALPDIPASGL LAQGLGSSHS DSLMFSMLHP PKRFRESRES  240
ECLIPCVNSS TADYFRAFDQ YPDDGCEKIT QLSSSILPGS HALLNGNFSS SEPMPWAMNP  300
ELPSLQYSDA QVGSWETGTP SSPLPSLDSV STLIQSPSTE QAQSDSLSRR NSGLLEAVLY  360
ESHTLKSSKN SFCDLTSNVS VVAGDAMDSL SQNLRETQWE IHSDPISPLG HSTSSVFSEC  420
TPISGSSFDE PHSVEIFPEC LAKQEAVDWV TTKCDVNEEN ANQMMFLRPD FLLASNWFGH  480
STERGREHSV LNDTRGTLLG EDFNGDCKQI STMSVSDSSC QKRGCGSCSW DDMSTACELS  540
ENL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	3e-86	MYB family protein