PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028073237.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARR-B

Protein Properties

Length: 657aa MW: 72701.6 Da PI: 5.9919

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028073237.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91	1e-28	201	254	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt +LH++Fv av+qL G++kA+Pk+il++m+v+ Lt+e+v+SHLQkYRl XP_028073237.1 201 KPRVVWTVDLHRKFVAAVNQL-GIDKAVPKRILDMMNVEKLTRENVASHLQKYRL 254 79*****************.******************************8 PP
2	Myb_DNA-binding	38.6	2.5e-12	203	253	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r WT +++ ++v av+qlG + +k+I +m+ +++t++++ s++qky+ XP_028073237.1 203 RVVWTVDLHRKFVAAVNQLGIDkaVPKRILDMMNvEKLTRENVASHLQKYR 253 678******************************99***********7 PP
3	Response_reg	80.5	5.5e-27	20	128	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ +++l+++l+k +y +v++++++ al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+ +++ + + G XP_028073237.1 20 VLAVDDDPICLRVLETLLRKCQY-RVTTTSQAITALKLLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDTKLVMKGITHG 112 799******************.***********888888***************87754.558****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + XP_028073237.1 113 ACDYLLKPIRIEELKN 128 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence
MVVDQSFDEP NDRFPMGMGV LAVDDDPICL RVLETLLRKC QYRVTTTSQA ITALKLLREN 60 KNKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DTKLVMKGIT HGACDYLLKP 120 IRIEELKNIW QHVVRRKKND PKDQSNFDKP HHESEGGQEI TVTGDSDQNI KLNRKRKDQN 180 EDEGDRADDG QDNEDPSMQK KPRVVWTVDL HRKFVAAVNQ LGIDKAVPKR ILDMMNVEKL 240 TRENVASHLQ KYRLYLKRIS CVASQQANIV AALGGADSAY LQMSSLNGFG NYHSMTGSAQ 300 FQNAIVGSFS SSGMLDRLNT PAVLGSRGLS STGMIQSKFP PVILPGNQNG NTFQGMPTSL 360 EFDQLQHNNG VDHFANLSTG TNESMVFPIS GDFLDANING STSRNSLHGV PYNPVILQGH 420 PQPQEIERRG VCGNQSRVTV EPSNIEFPSH MPDFARCTDT WPAIQSSEIQ SNSFTSSDFR 480 INMSSIAMDG GSNSHDISSV NSTNAQFPEL RTDLKCLATL GLGSNGEQRM NNGKKSGWDH 540 NKLDASHNPN LMQSLMNSVI PHGVMNSYNQ RSDPMNTVGN RNNDFSMIGR PNLVDHHLSV 600 QRNGVEQSAM EATVNIKQGY SCNNDDSLED LVSAMMKQEN IRDGDFGCET HSLGTCI

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence

MVVDQSFDEP NDRFPMGMGV LAVDDDPICL RVLETLLRKC QYRVTTTSQA ITALKLLREN  60
KNKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DTKLVMKGIT HGACDYLLKP  120
IRIEELKNIW QHVVRRKKND PKDQSNFDKP HHESEGGQEI TVTGDSDQNI KLNRKRKDQN  180
EDEGDRADDG QDNEDPSMQK KPRVVWTVDL HRKFVAAVNQ LGIDKAVPKR ILDMMNVEKL  240
TRENVASHLQ KYRLYLKRIS CVASQQANIV AALGGADSAY LQMSSLNGFG NYHSMTGSAQ  300
FQNAIVGSFS SSGMLDRLNT PAVLGSRGLS STGMIQSKFP PVILPGNQNG NTFQGMPTSL  360
EFDQLQHNNG VDHFANLSTG TNESMVFPIS GDFLDANING STSRNSLHGV PYNPVILQGH  420
PQPQEIERRG VCGNQSRVTV EPSNIEFPSH MPDFARCTDT WPAIQSSEIQ SNSFTSSDFR  480
INMSSIAMDG GSNSHDISSV NSTNAQFPEL RTDLKCLATL GLGSNGEQRM NNGKKSGWDH  540
NKLDASHNPN LMQSLMNSVI PHGVMNSYNQ RSDPMNTVGN RNNDFSMIGR PNLVDHHLSV  600
QRNGVEQSAM EATVNIKQGY SCNNDDSLED LVSAMMKQEN IRDGDFGCET HSLGTCI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-135	ARR-B family protein