PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028073024.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 290aa    MW: 30550.4 Da    PI: 9.717
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028073024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.61.2e-211662349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     en+sn qvtfskRr g++KKA+ELS+LC+aev +i fs+  k y +
  XP_028073024.1 16 MENESNLQVTFSKRRSGLFKKASELSILCGAEVGIIAFSPGKKAYSF 62
                    69**************************************9998877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MERKSKGRQK ITMTKMENES NLQVTFSKRR SGLFKKASEL SILCGAEVGI IAFSPGKKAY  60
SFGHPAVDMI IDRFLSRDAP LNSGTHQLVE AHRSACVRDL NLQLTHVQAL LDVEKQRRTA  120
LDQLKMAEGQ GEHRWWEGPV EEMNLPQLLQ FKAAMMELRT RIGIRADRIV HEQPANPFGF  180
GVGPTSFGGR AGGAGFHPGP SSFGGGGGGF LDGQSSFGGG AGGSSFQAGP SFAGGVGIGA  240
LPFGAGPGSF GAGGGGSDNN GIVPFDGRVL HAGGSKAPYE FNHGYGHGFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-54M-type_MADS family protein