PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028072968.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 425aa MW: 48244.8 Da PI: 6.7424

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028072968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.8	1.3e-21	125	218	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek....dgkwevtkleleHnHela 90 fYn+YAk GFs++ks+ +++ ++g++ +r + Cs+eg+r ++ + +ek+r ++a tr+gCka+++++ + +gk++vt+++ +HnHela XP_028072968.1 125 FYNAYAKAKGFSIQKSRLNTN-KEGKVASRLWLCSREGQRLPKYLDrvAEKSRAPKALTRVGCKAQFRIRYDAdageRGKYVVTHFVADHNHELA 218 9***************999.6666**********99988877899999************987777789************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MAICRGGGDL LQWPLPFEAV AVVCGHVKWG EVSMAPAEVK REGDDYDIPN EVDDIRLINE 60 SRTEPYHGCE AGLSNEEATN MNVEDGGADV KKEMVDDAHC NDMVGDVERA ILAQKFDSVE 120 DGEAFYNAYA KAKGFSIQKS RLNTNKEGKV ASRLWLCSRE GQRLPKYLDR VAEKSRAPKA 180 LTRVGCKAQF RIRYDADAGE RGKYVVTHFV ADHNHELAEQ HCVMYLRSHR SLNNADKAQE 240 IAMRNVVVKT SQIMDYMVNQ SGSHENVGFI LRICTTIFKP NVEQKLRMVM RRADYAKFGD 300 VLMFDSTYRT NAYKKPFVML AGVTNHFRTT IFACVLLANE TIDTYTWVLE TFMEAMDNKA 360 PVSVLTDEDK AMREANRRVF LDARHRLCNW HLGKNAVSNV HKSGFAYAFK QCMDMETDET 420 KFEHG

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MAICRGGGDL LQWPLPFEAV AVVCGHVKWG EVSMAPAEVK REGDDYDIPN EVDDIRLINE  60
SRTEPYHGCE AGLSNEEATN MNVEDGGADV KKEMVDDAHC NDMVGDVERA ILAQKFDSVE  120
DGEAFYNAYA KAKGFSIQKS RLNTNKEGKV ASRLWLCSRE GQRLPKYLDR VAEKSRAPKA  180
LTRVGCKAQF RIRYDADAGE RGKYVVTHFV ADHNHELAEQ HCVMYLRSHR SLNNADKAQE  240
IAMRNVVVKT SQIMDYMVNQ SGSHENVGFI LRICTTIFKP NVEQKLRMVM RRADYAKFGD  300
VLMFDSTYRT NAYKKPFVML AGVTNHFRTT IFACVLLANE TIDTYTWVLE TFMEAMDNKA  360
PVSVLTDEDK AMREANRRVF LDARHRLCNW HLGKNAVSNV HKSGFAYAFK QCMDMETDET  420
KFEHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-46	FAR1 family protein