PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028072944.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | LBD | ||||||||
Protein Properties | Length: 220aa MW: 24294.1 Da PI: 4.4675 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.4 | 2e-37 | 7 | 105 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrr+C+++Cv+ap+f ++ +++fa+vhk+FGasnv+kll++lp ++r++a+ ++ yeA ar++dP+yG+v+ i++lqqq+++l++e+ XP_028072944.1 7 SCGACKFLRRRCTSECVFAPHFNYDEaAAHFAVVHKVFGASNVSKLLTNLPMNDRREAAITISYEALARMHDPIYGCVSQIFALQQQVASLQEEI 101 6*********************998868******************************************************************9 PP DUF260 95 allk 98 ++l+ XP_028072944.1 102 ETLG 105 9875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MTGLGSSCGA CKFLRRRCTS ECVFAPHFNY DEAAAHFAVV HKVFGASNVS KLLTNLPMND 60 RREAAITISY EALARMHDPI YGCVSQIFAL QQQVASLQEE IETLGIQMAN LTVDVSSCGS 120 SQATNQFNNE LWVYSQQHND MTNVQNFLSQ QDSLLSHGGD TEGNHDLYTQ MNIQFPCLGL 180 EDQTSSVPYP DLSLLERLLE GIDQGIYASC PWIVNGSNTN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 2e-43 | LBD family protein |