PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028072709.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 26368.2 Da PI: 9.2455 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.5 | 4.7e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gklye+s+ XP_028072709.1 9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPKGKLYEFSN 59 79***********************************************95 PP | |||||||
2 | K-box | 54.6 | 4.9e-19 | 81 | 163 | 5 | 85 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne..llleqieelqkkek 85 s++++++++ ++l++e+ L ++ie Lq ++R+llG++Les + eLqq+++q+e+sl+kiR++K++ +l+e+ +l++k k XP_028072709.1 81 SSNNAAQENLQHLKEEAVSLSEKIELLQVSKRKLLGDGLESSCIDELQQVQDQIEQSLSKIRARKTQerILTEENAKLREKLK 163 455689999********************************************************975578888888887765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MVRGKTQMKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSP KGKLYEFSNS 60 RRLSINKTID RYQKNAKDLG SSNNAAQENL QHLKEEAVSL SEKIELLQVS KRKLLGDGLE 120 SSCIDELQQV QDQIEQSLSK IRARKTQERI LTEENAKLRE KLKCDQMELP CLAFAQEVPT 180 QREISDVETE LFIGPPDEQR TTRWLIQSST AINGMRLRYK KPESFPGFEC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 1e-67 | MIKC_MADS family protein |