PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028072402.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Protein Properties

Length: 388aa MW: 44565.1 Da PI: 10.3075

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028072402.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.4	3.1e-19	26	116	6	100
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100 ++s v +++ l++p kf++++g+k + sk l+ +sg +W+v+l ++++g+++l +GWkeF k + g f+vF+++g+s f +v +f+ks XP_028072402.1 26 INSAVVQNQKLMIPGKFVRKYGEKLKLSKLAFLKVPSGAVWQVEL--SNSRGHVWLHNGWKEFMKYYSISYGHFLVFQYNGNSIF--HVLIFDKS 116 5999****************9888999**************..******************************9999..***985 PP
2	B3	48.1	2.1e-15	268	348	3	87
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + ps+ ++ l +p +fa+++ + k+++ ++l+ ++gr+W+ ++ +k+++ + GW +F+++n++ +gD++vF+++ + XP_028072402.1 268 VYMQPSYLRPKQSLHIPLDFAKKYFSGKQSG--VILRVSDGRTWSAQF--YGKKRGPKHKLGWISFARDNNILAGDVCVFEMMMK 348 4566777778899*********5444454..999********..777778788889*****************6633 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MVNSRRRSGT GSSSPAKGSP QFFRIINSAV VQNQKLMIPG KFVRKYGEKL KLSKLAFLKV 60 PSGAVWQVEL SNSRGHVWLH NGWKEFMKYY SISYGHFLVF QYNGNSIFHV LIFDKSASEI 120 EYPSGQTNQK WDFQIPETED VELDDSVEIL DDFLTCQGTF EKDGSVEILN DPPTCKRRKM 180 MRTNLTCKTK NDSNLHSRGI QSKEGKLANL NEDVTREIKK ECTQGMHTAQ GRLPSQVPDR 240 RKSVNVDHRF RARQRAKGFE SKNPFFMVYM QPSYLRPKQS LHIPLDFAKK YFSGKQSGVI 300 LRVSDGRTWS AQFYGKKRGP KHKLGWISFA RDNNILAGDV CVFEMMMKSN IEPPLLNVMI 360 LRAAEDWSVR KSVNLKDQQK VAESWMGE

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MVNSRRRSGT GSSSPAKGSP QFFRIINSAV VQNQKLMIPG KFVRKYGEKL KLSKLAFLKV  60
PSGAVWQVEL SNSRGHVWLH NGWKEFMKYY SISYGHFLVF QYNGNSIFHV LIFDKSASEI  120
EYPSGQTNQK WDFQIPETED VELDDSVEIL DDFLTCQGTF EKDGSVEILN DPPTCKRRKM  180
MRTNLTCKTK NDSNLHSRGI QSKEGKLANL NEDVTREIKK ECTQGMHTAQ GRLPSQVPDR  240
RKSVNVDHRF RARQRAKGFE SKNPFFMVYM QPSYLRPKQS LHIPLDFAKK YFSGKQSGVI  300
LRVSDGRTWS AQFYGKKRGP KHKLGWISFA RDNNILAGDV CVFEMMMKSN IEPPLLNVMI  360
LRAAEDWSVR KSVNLKDQQK VAESWMGE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-43	B3 family protein