PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028072311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | LBD | ||||||||
Protein Properties | Length: 170aa MW: 19746.3 Da PI: 7.0166 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.4 | 1.8e-36 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrr+C++dCvla yfpa+++++f +vhk+FG+snv+ +l++lp + r +a++++v+eA r++dP+yG++++i++lqqq+ q++ e+a XP_028072311.1 6 RCAACKSLRRRCSQDCVLALYFPANNAERFSCVHKIFGTSNVTMMLEQLPIQSRAEAADCMVMEASSRIQDPIYGCTKTIFELQQQIIQTQYEIA 100 6*********************************************************************************************9 PP DUF260 96 llkee 100 +++ + XP_028072311.1 101 KIQCQ 105 98865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MSNSTRCAAC KSLRRRCSQD CVLALYFPAN NAERFSCVHK IFGTSNVTMM LEQLPIQSRA 60 EAADCMVMEA SSRIQDPIYG CTKTIFELQQ QIIQTQYEIA KIQCQIAICC AQQQMNNHQQ 120 LVNQQNQYQQ QQPPWMMMNA NHNHQQQQEE EQLHLDHHQQ LSGSHHHPQF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26620.1 | 1e-36 | LBD family protein |