PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028072283.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 748aa MW: 81223.9 Da PI: 6.5872

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028072283.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.5	9.3e-15	300	359	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_028072283.1 300 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 359 57*****************666664478446***********************98 PP
2	AP2	46.6	8.7e-15	402	453	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_028072283.1 402 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 453 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence
MASSMNNWLG FSLSPQELPP QQQQPQRHHQ DEISGTDVSA ECFDLSSDSS VLPSLNLPAP 60 FGIFEAFNRN NQSQDWNMKD MSMNSDINYK TNSSSDYSML MGSSCNSQNL ENQGGPKLEN 120 FLGGHSFSGR CNTISSASYG GVTGGGGAAA DYNMYPNCSL QLPSEAIADN GQGSNGGVSI 180 NNNSTPTTTI GLSMIKNWLR NQPTPTQPEN KNDGGCGGGI GGVAKGRPTS AQTLSLSMRS 240 ESPLPLLTAS GGASGGGGGG GGESTSSDNS QPKETTLDAQ TGAIEAVPRK SIDTFGQRTS 300 IYRGVTRHRW TGRYEAHLWD NSCRREGQTR KGRQVYLGGY DKEEKAARAY DLAALKYWGT 360 TTTTNFPTSN YEKEIEEMKH MTRQEYVASL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI 420 GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI LESSTLPIGG 480 AAKRLKDAAD KADQLNMTTM SMHNNNTHLV DDNNLLNSHL SLTDHGITNA AVYGDGWPTI 540 AFQQAQPYSS TMHYHPYGIG QQQQRATMPV WCKQEQEQDQ DHQDDLNQLQ LGNNTHNFFH 600 HPTSALHNLM SLDEHSSAGS NSLVYSGGGD SNGGGGFVMP IATVISQEGN NTTAHGFGDN 660 ENIFGVMPDP YHGRNLYYLS QHQQSLSAGG GAVKASVYEY DHHHHHHQIQ GTSCNNWIPT 720 AVPTLAPARS NNMAVCHGAQ TFTVWNDT

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence

MASSMNNWLG FSLSPQELPP QQQQPQRHHQ DEISGTDVSA ECFDLSSDSS VLPSLNLPAP  60
FGIFEAFNRN NQSQDWNMKD MSMNSDINYK TNSSSDYSML MGSSCNSQNL ENQGGPKLEN  120
FLGGHSFSGR CNTISSASYG GVTGGGGAAA DYNMYPNCSL QLPSEAIADN GQGSNGGVSI  180
NNNSTPTTTI GLSMIKNWLR NQPTPTQPEN KNDGGCGGGI GGVAKGRPTS AQTLSLSMRS  240
ESPLPLLTAS GGASGGGGGG GGESTSSDNS QPKETTLDAQ TGAIEAVPRK SIDTFGQRTS  300
IYRGVTRHRW TGRYEAHLWD NSCRREGQTR KGRQVYLGGY DKEEKAARAY DLAALKYWGT  360
TTTTNFPTSN YEKEIEEMKH MTRQEYVASL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI  420
GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI LESSTLPIGG  480
AAKRLKDAAD KADQLNMTTM SMHNNNTHLV DDNNLLNSHL SLTDHGITNA AVYGDGWPTI  540
AFQQAQPYSS TMHYHPYGIG QQQQRATMPV WCKQEQEQDQ DHQDDLNQLQ LGNNTHNFFH  600
HPTSALHNLM SLDEHSSAGS NSLVYSGGGD SNGGGGFVMP IATVISQEGN NTTAHGFGDN  660
ENIFGVMPDP YHGRNLYYLS QHQQSLSAGG GAVKASVYEY DHHHHHHQIQ GTSCNNWIPT  720
AVPTLAPARS NNMAVCHGAQ TFTVWNDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20840.1	1e-122	AP2 family protein