PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028071974.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 207aa MW: 23619.2 Da PI: 6.5072 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.3 | 4.7e-12 | 84 | 106 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+ff+rt tCk+G +CkF+H+ XP_028071974.1 84 EDCPFFLRTRTCKFGLNCKFNHP 106 89********************9 PP | |||||||
2 | zf-CCCH | 29.2 | 1.6e-09 | 135 | 159 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++ G CkyG +C+++H++ XP_028071974.1 135 QTECKNYLTPGGCKYGKSCRYNHSK 159 679********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MWRETDMETF EANSIFALKQ TSQSELGFAS SDSVTHFTTT QSQSTLDSDC FTDESLSQKF 60 ENIGLRSNED ESSNESHPLR PYAEDCPFFL RTRTCKFGLN CKFNHPVRRT NQKAGKEKEK 120 DTGKAKEGFS EKPEQTECKN YLTPGGCKYG KSCRYNHSKD ESEIAPPELN FLGLPIRLGE 180 KEWVARHAGP HAKWFLWIWS SLQVSPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 8e-31 | C3H family protein |