PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028071912.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

SBP

Protein Properties

Length: 424aa MW: 46992.9 Da PI: 6.9919

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028071912.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	174	250	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC++ l +akeyhrrhkvCe+hskap+v v gleqrfCqqCsrfhe+sefD++krsCrrrLa+hnerrrk + XP_028071912.1 174 RCQVDGCNVALVNAKEYHRRHKVCEMHSKAPKVEVLGLEQRFCQQCSRFHEVSEFDDSKRSCRRRLAGHNERRRKGS 250 6*************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MENGWSLFNT SITATTNTST TNNSTTTTSS SSRGHNGHCN NLAWDIWDMG TSRFDWNTTS 60 STSFLHHHHQ QQHQQQPPSS ATVTAASEAH ALMLGHQTAA SLYSGAAGPH YYHPDPHLMC 120 LKLGKRHYFE DATGAPLGDC HVVGGGGGGK RGKTYYGGGG GGGEVVGTSA PAPRCQVDGC 180 NVALVNAKEY HRRHKVCEMH SKAPKVEVLG LEQRFCQQCS RFHEVSEFDD SKRSCRRRLA 240 GHNERRRKGS HDSIPRSPHP SLSHENKLMA ERFSYLKLPT GRALSLLSSS WKNNSWFSSS 300 DLSLRCSAAL RELIAENRAA ILARQLVLER DWHRGSHDTM DDVNATQLAG TNPMTPHHHQ 360 MFPEPHGYWD RFNEGSGHVT LDLMQAPSSA FGLLSVRGKS KEEEEEEEEE EEEEECSGLW 420 THMV

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MENGWSLFNT SITATTNTST TNNSTTTTSS SSRGHNGHCN NLAWDIWDMG TSRFDWNTTS  60
STSFLHHHHQ QQHQQQPPSS ATVTAASEAH ALMLGHQTAA SLYSGAAGPH YYHPDPHLMC  120
LKLGKRHYFE DATGAPLGDC HVVGGGGGGK RGKTYYGGGG GGGEVVGTSA PAPRCQVDGC  180
NVALVNAKEY HRRHKVCEMH SKAPKVEVLG LEQRFCQQCS RFHEVSEFDD SKRSCRRRLA  240
GHNERRRKGS HDSIPRSPHP SLSHENKLMA ERFSYLKLPT GRALSLLSSS WKNNSWFSSS  300
DLSLRCSAAL RELIAENRAA ILARQLVLER DWHRGSHDTM DDVNATQLAG TNPMTPHHHQ  360
MFPEPHGYWD RFNEGSGHVT LDLMQAPSSA FGLLSVRGKS KEEEEEEEEE EEEEECSGLW  420
THMV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27360.4	2e-36	SBP family protein