PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028071679.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 344aa MW: 38534.8 Da PI: 6.3704

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028071679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	46.5	6.1e-15	264	288	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C+yG++C+FaHg XP_028071679.1 264 KTELCNKWQETGKCPYGENCQFAHG 288 9***********************8 PP
2	zf-CCCH	21.5	4e-07	301	326	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ tC+yG rC+F H+ XP_028071679.1 301 YKTEVCRMVLAGDTCPYGHRCHFRHS 326 9********55********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MQKEEVCGGN NNNDNSSMDS SPDLSRNPHL STTSHNQSDD IDFTGFYPSM FPPNSNSLSI 60 SPSDCSFDDD ATNAIATDNR LYQARSILEH QQLYNRYAMC IAHLQESLKE VDTLREENDN 120 LRVSNADLIK RLSLLSQATI QNCLLSSSHP PLPFINDFNR LSVGGTVRDS HVAEEASNIS 180 PTSVIEHNRF DGRNVESVAL PKSISVRSSG YLKMTQRGGS NSGPSRGNRV KSPVLNESQR 240 VYVPGGKREE EALEFEVYNQ GMIKTELCNK WQETGKCPYG ENCQFAHGIT ELRPVIRHPR 300 YKTEVCRMVL AGDTCPYGHR CHFRHSLTEQ ERLLGPLRLN DLNG

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MQKEEVCGGN NNNDNSSMDS SPDLSRNPHL STTSHNQSDD IDFTGFYPSM FPPNSNSLSI  60
SPSDCSFDDD ATNAIATDNR LYQARSILEH QQLYNRYAMC IAHLQESLKE VDTLREENDN  120
LRVSNADLIK RLSLLSQATI QNCLLSSSHP PLPFINDFNR LSVGGTVRDS HVAEEASNIS  180
PTSVIEHNRF DGRNVESVAL PKSISVRSSG YLKMTQRGGS NSGPSRGNRV KSPVLNESQR  240
VYVPGGKREE EALEFEVYNQ GMIKTELCNK WQETGKCPYG ENCQFAHGIT ELRPVIRHPR  300
YKTEVCRMVL AGDTCPYGHR CHFRHSLTEQ ERLLGPLRLN DLNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	6e-72	C3H family protein