PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028071343.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 1476aa MW: 163502 Da PI: 7.0298

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028071343.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	1444	1470	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg +F+ s++ rH r+ H XP_028071343.1 1444 YQCKveGCGLTFRFVSDYSRHRRKtgH 1470 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1476 aa Download sequence
MGDVKIPNWL KGLPFAPEFR PTDTEFADPI AYISKIEKEA SVFGICKVIP PLPKPSKKYV 60 ISNLNKSLSK SPELGPDINV ADVSSSSKMD SGNEANDGEV RAVFTTRHQE LGQNAKKTKG 120 AVQAQPPVVH KQVWQSGEVY TLEQFESKSK AFARSQLGMV KEHSPLVIEA LFWKAATEKP 180 IYVEYANDVP GSGFGEPEGT LRYFHRRRRR RLFSRNSRVS AYSKKYHVNT MSNNCENTGA 240 STKNSPNSLS ETSKVSVSLP IMLANQTSQI SKQKISNASN EVEGTSGWKL SNSPWNLQVI 300 ARSPGSLTRF MPDDIPGVTS PMVYIGMLFS WFAWHVEDHE LHSLNFLHTG SPKTWYAVPG 360 EYAFAFEEVV RNQAYAGNYD RLAALSLLGE KTTLLSPEVV VESGIPCCRL VQNPGEFVVT 420 FPRAYHVGFS HGFNCGEAAN FGTSKWLKVA KEAAVRRAAM NYLPMLSHQQ LLYLLTMSFI 480 SRIPRSLLPG ARSSRLRDRQ REERELSVKK AFIEDILGEN NLLTSLLGKK SSYHVVLWDL 540 ESLPSPSKQS EPCSSVAVFV PPPSEDICSE IKEKQDLLSE MSLYMETVND LYLDDDDLSC 600 DFQVDSGTLA CVACGILGFP FMSVVQPSEK ASMELLHDLG VSKHIESHSP LVLDDMVDVF 660 VSDGLKDECK ALQRQKSSEH NCHIPTSRAS KCERELKLTK DDEKSSADAN SFPSDAIEKI 720 ERNERNLLHN PNGASSSAKS IESVICSSED LSAVPDFSPP LKDLPVSSEA KFDKGWSATR 780 GFLRPRIFCL EHAIQIEELL RSKGGANVLV ICHSDFQKIK AHAAAIAEEI GSPFGYNEIP 840 LDNASQEDLN LIDLAIDDEE HDECGKDWTS KLSINLRHCV KVRKNSPSKQ EQHALVLDGL 900 FSNITPSSNT FNIKWPSRKS RSKRNLNLKK PSESIQLQNP VQMKLSGSIQ IEKDDVLGAK 960 SDGGTVRKEG KLNQYSRRNF KSKPGGSATA TKTFGHSSKY VQNEVSVADC GNLDKYSKNV 1020 CQNILFHIDN TGKNSSGLTV LGSNENPGLT IRDLSENSVP SQVADLPLAA ATPGVENVEA 1080 QIDDNCGKEI IMKGKACDST SGGGSEMQHE IEVDEGNKEN DKLYAEKSGG SLSIAVESTE 1140 NCETQRENQI TEEISLTKVA CDLVTISDEQ CNIQSSGGVL TKEASDLVNS VPSCANGPVV 1200 GSSDAQREQN MVDNIHASAE AIDSVIQEKI ESVNRSKEKE PVLSNVEPLS RSVEEMHSDN 1260 ENCSVPEKRV LENADSTVVC AKSTARNGRK RRREVEADLS CFIRGPCEGL RPRAAKEAKR 1320 GEIDDSNKMF EEKPTLKKTR KSSDGVVSLK DKKEKNGKGS HRCDLEGCRM SFETKADLLL 1380 HKRNRCPHEG CGKRFSSHKY AMLHQRVHDD DRPLKCPWKG CTMSFKWAWA RTEHLRVHTG 1440 ERPYQCKVEG CGLTFRFVSD YSRHRRKTGH YVNLPT

Sequence ? help Back to Top

Protein Sequence Length: 1476 aa Download sequence

MGDVKIPNWL KGLPFAPEFR PTDTEFADPI AYISKIEKEA SVFGICKVIP PLPKPSKKYV  60
ISNLNKSLSK SPELGPDINV ADVSSSSKMD SGNEANDGEV RAVFTTRHQE LGQNAKKTKG  120
AVQAQPPVVH KQVWQSGEVY TLEQFESKSK AFARSQLGMV KEHSPLVIEA LFWKAATEKP  180
IYVEYANDVP GSGFGEPEGT LRYFHRRRRR RLFSRNSRVS AYSKKYHVNT MSNNCENTGA  240
STKNSPNSLS ETSKVSVSLP IMLANQTSQI SKQKISNASN EVEGTSGWKL SNSPWNLQVI  300
ARSPGSLTRF MPDDIPGVTS PMVYIGMLFS WFAWHVEDHE LHSLNFLHTG SPKTWYAVPG  360
EYAFAFEEVV RNQAYAGNYD RLAALSLLGE KTTLLSPEVV VESGIPCCRL VQNPGEFVVT  420
FPRAYHVGFS HGFNCGEAAN FGTSKWLKVA KEAAVRRAAM NYLPMLSHQQ LLYLLTMSFI  480
SRIPRSLLPG ARSSRLRDRQ REERELSVKK AFIEDILGEN NLLTSLLGKK SSYHVVLWDL  540
ESLPSPSKQS EPCSSVAVFV PPPSEDICSE IKEKQDLLSE MSLYMETVND LYLDDDDLSC  600
DFQVDSGTLA CVACGILGFP FMSVVQPSEK ASMELLHDLG VSKHIESHSP LVLDDMVDVF  660
VSDGLKDECK ALQRQKSSEH NCHIPTSRAS KCERELKLTK DDEKSSADAN SFPSDAIEKI  720
ERNERNLLHN PNGASSSAKS IESVICSSED LSAVPDFSPP LKDLPVSSEA KFDKGWSATR  780
GFLRPRIFCL EHAIQIEELL RSKGGANVLV ICHSDFQKIK AHAAAIAEEI GSPFGYNEIP  840
LDNASQEDLN LIDLAIDDEE HDECGKDWTS KLSINLRHCV KVRKNSPSKQ EQHALVLDGL  900
FSNITPSSNT FNIKWPSRKS RSKRNLNLKK PSESIQLQNP VQMKLSGSIQ IEKDDVLGAK  960
SDGGTVRKEG KLNQYSRRNF KSKPGGSATA TKTFGHSSKY VQNEVSVADC GNLDKYSKNV  1020
CQNILFHIDN TGKNSSGLTV LGSNENPGLT IRDLSENSVP SQVADLPLAA ATPGVENVEA  1080
QIDDNCGKEI IMKGKACDST SGGGSEMQHE IEVDEGNKEN DKLYAEKSGG SLSIAVESTE  1140
NCETQRENQI TEEISLTKVA CDLVTISDEQ CNIQSSGGVL TKEASDLVNS VPSCANGPVV  1200
GSSDAQREQN MVDNIHASAE AIDSVIQEKI ESVNRSKEKE PVLSNVEPLS RSVEEMHSDN  1260
ENCSVPEKRV LENADSTVVC AKSTARNGRK RRREVEADLS CFIRGPCEGL RPRAAKEAKR  1320
GEIDDSNKMF EEKPTLKKTR KSSDGVVSLK DKKEKNGKGS HRCDLEGCRM SFETKADLLL  1380
HKRNRCPHEG CGKRFSSHKY AMLHQRVHDD DRPLKCPWKG CTMSFKWAWA RTEHLRVHTG  1440
ERPYQCKVEG CGLTFRFVSD YSRHRRKTGH YVNLPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	211	RYFHRRRRRR
2	206	211	RRRRRR
3	206	215	RRRRRRLFSR
4	207	216	RRRRRRLFSR
5	208	217	RRRRRRLFSR
6	1289	1293	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein