PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028070635.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 670aa    MW: 74068.2 Da    PI: 5.6427
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028070635.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS397.61.3e-1212836501373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++c+e + s++ + +++++a+l +lasp+g+p+ Rl+ayf eAL  r++r +++++++ +p+e + +  ++  +al+l+++vsPi+kf h
  XP_028070635.1 283 LISLLMACVEEIGSKNIAGINHFIAKLGDLASPRGSPISRLIAYFIEALGLRVTRLWPNIFHITTPRELD-RADDDGGNALRLLNQVSPIPKFIH 376
                     5799**************************************************************9998.57788899**************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +t N+  l+a+eg++rvHiiDfd+++GlQWp+L+q+LasR+++p ++RiTgvg+    sk+ l etgerL+ fA +l++pfef++ v++rled++
  XP_028070635.1 377 FTSNEIFLRAFEGKDRVHIIDFDVKEGLQWPSLFQSLASRTNPPSHVRITGVGE----SKQDLIETGERLSGFAGALNLPFEFHA-VVDRLEDVR 466
                     ******************************************************....9**************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerik 284
                     l++L+vk++E++aVn+++qlh++l +      + +++L l++s++P++vvv+eqea+hn+ s+ +r++++l+yysa+fds+  + lp +s  rik
  XP_028070635.1 467 LWMLHVKERETVAVNCIFQLHKTLYDASGG--AFKDFLGLIRSTNPTIVVVAEQEAEHNEISLEARLSNSLKYYSAIFDSVdFSFLPLDSPVRIK 559
                     **********************99554433..3589*********************************************556789999***** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373
                     +E+  ++rei+n++aceg +r+erhe ++kW++ +e+ GF+++ ++e++  q ++ll++++ + ++ve   ++ ++++l W d+pL++vSaW
  XP_028070635.1 560 IEET-FAREIRNIIACEGIDRVERHECFAKWKRLIEQGGFRSAGITERELIQSQMLLKMYNCENWSVErkgQDGDAITLNWLDQPLFTVSAW 650
                     ****.********************************************************8889**95545567777************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    
MLAGCSSTLL SPRHRFRSEA STQFQPCNFT SMSTQRLDLP CSFPRKDTSR SQPIRPVGLS  60
VEKPLESKTN TCNLKQSIRL PPSATTAQTT TAFIEGGGGR DIKDELWEKG TKSLKRFAEQ  120
SFFDDNDDDD EPCMKRAKRK RGCGRSSDDS HSPKGGADEE LRSLGHLGSG NFWFQPSFER  180
VCFVPSDVIS LPLPLSNTPF VTEIADLGDD KNIESSHRQP VQAASGSSTS SESHSLSLKL  240
SDNPSGHEIG NGSGLPNPPT GGGTEVAAAG DNNNHREDDG FELISLLMAC VEEIGSKNIA  300
GINHFIAKLG DLASPRGSPI SRLIAYFIEA LGLRVTRLWP NIFHITTPRE LDRADDDGGN  360
ALRLLNQVSP IPKFIHFTSN EIFLRAFEGK DRVHIIDFDV KEGLQWPSLF QSLASRTNPP  420
SHVRITGVGE SKQDLIETGE RLSGFAGALN LPFEFHAVVD RLEDVRLWML HVKERETVAV  480
NCIFQLHKTL YDASGGAFKD FLGLIRSTNP TIVVVAEQEA EHNEISLEAR LSNSLKYYSA  540
IFDSVDFSFL PLDSPVRIKI EETFAREIRN IIACEGIDRV ERHECFAKWK RLIEQGGFRS  600
AGITERELIQ SQMLLKMYNC ENWSVERKGQ DGDAITLNWL DQPLFTVSAW APIDAAVVAG  660
SSSSYSQPPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein