PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028070422.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 251aa    MW: 27195.8 Da    PI: 6.588
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028070422.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260989.9e-314107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yGa+g++++++++l+++
  XP_028070422.1   4 SCNGCRVLRKGCSDNCTIRPCLqwiktPESQANATVFLAKFYGRAGLQNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGAAGLLWSGNWHLCHA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  XP_028070422.1  99 AVEAVLHGS 107
                     **9988765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MRVSCNGCRV LRKGCSDNCT IRPCLQWIKT PESQANATVF LAKFYGRAGL QNLINAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGAAGLLWS GNWHLCHAAV EAVLHGSPIV QLSPDSELST  120
MSPPLKACDI RHVSKDESSA ASRDLHKVKC RSRFKRAAGK PKVEVEPSVD EAAQVMWSWS  180
NKKESASHDS VVSHQEEPPS HGGESGDGDS MSVETVEASL AAVKPDCSDV ELELTLGFEP  240
YVRAETGEGL V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.18e-91LBD family protein