PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028069874.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 310aa MW: 33417.2 Da PI: 4.3826

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028069874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.8e-05	285	307	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+k+F++ L++H + H XP_028069874.1 285 SCKSCSKTFNSDNALQSHTKAkH 307 6*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MEFWGVEVKA GQPLKVTPQL GKVIHISQGA LGEGKKEKGN DLIPLRVKIN GEKFVVGSLS 60 AENFPQVAFD LVFEKDFELS HDWKNGSVYF CGYSADNPFV DDDEFESDDS SDDEDIPLPL 120 TENGKIESKV EEVKPDASKG KTAKPESSAK PKVTVVEPKK DDESDDDDSD DSFEDDSDDE 180 DMMGASDDIG DSDDDDTEDD DSEDEDDETP KKAGPAKKRA TESATKTPVP AKKAKLDTPQ 240 KTGGGKKGGG HTATPHPSKQ VGKTNATANS NKSNEKSPKS EAKVSCKSCS KTFNSDNALQ 300 SHTKAKHDGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	243	250	GGGKKGGG
2	244	251	GGGKKGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	1e-35	C2H2 family protein