PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028069747.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 460aa    MW: 52619.1 Da    PI: 6.2564
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028069747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS313.16.2e-96804581374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl  A  +++++lela + L++l +++s +gd++qR+aa+f+ +L arl+   s  y+ +  ++t+    +ee++a++ ++ vsP+++f+h
  XP_028069747.1  80 LIHLLLISASSIDENNLELAVENLSELYQNVSLNGDSVQRVAAHFADGLVARLLTRKSPFYDMIMKEPTP----EEEFMAFTELYRVSPCFQFAH 170
                     689****************************************************9*****999888887....78999999************* PP

            GRAS  96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlv 182
                     +taNqaI ea+e++     + +H+iDfd+s+G+QWp+L+q+L++++ g+   slRiTg+g+    s eel+et+ rL +fA+ + ++ fef+ l 
  XP_028069747.1 171 FTANQAIIEAFEKDednnnSSLHVIDFDVSYGFQWPSLIQSLSEKATGANriSLRITGFGR----SYEELQETETRLVSFAKGFrNLVFEFQGL- 260
                     ************9877777889************************6655459********....9****************9758*******8. PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                        l   +l +Lr +++E++aVnlv++l +l  + ++    ++e+L+ v sl+P +vv+ve+e +++  sFl rf+e+l+y++a+fdsl+  lp 
  XP_028069747.1 261 ---LRGSKLINLRKRKNETVAVNLVFHLNTLN-SFMK----ISETLRSVHSLKPSIVVLVEEEGSRTPRSFLSRFMESLHYFAAMFDSLDDCLPL 347
                     ...6666678999***************9996.3333....457*************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve............eesgsl 358
                     +s+er ++E+  lg+ei++v   e+++ +  r e++e+W+ r+e  GF  ++ls+k + qaklll+        ++e            +++ ++
  XP_028069747.1 348 DSSERLSIEKNHLGKEIKKVMNYEKDDtSCPRYEKMETWKGRMEGHGFAGLKLSSKSMIQAKLLLKIRThYCPIQLEgeihggfrvfdrDDERAI 442
                     ************************9997889*********************************9855422224444333333333342335555 PP

            GRAS 359 vlgWkdrpLvsvSaWr 374
                      lgW+dr L+++SaW+
  XP_028069747.1 443 SLGWQDRCLITASAWQ 458
                     6**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    
MEGTDEEELL SLRLAIVTDS GCERKRKRKT KEAFNFNTLD SSEGCEGKIY GLLQMREQML  60
KLLDQKRKAV VDEDGKGLHL IHLLLISASS IDENNLELAV ENLSELYQNV SLNGDSVQRV  120
AAHFADGLVA RLLTRKSPFY DMIMKEPTPE EEFMAFTELY RVSPCFQFAH FTANQAIIEA  180
FEKDEDNNNS SLHVIDFDVS YGFQWPSLIQ SLSEKATGAN RISLRITGFG RSYEELQETE  240
TRLVSFAKGF RNLVFEFQGL LRGSKLINLR KRKNETVAVN LVFHLNTLNS FMKISETLRS  300
VHSLKPSIVV LVEEEGSRTP RSFLSRFMES LHYFAAMFDS LDDCLPLDSS ERLSIEKNHL  360
GKEIKKVMNY EKDDTSCPRY EKMETWKGRM EGHGFAGLKL SSKSMIQAKL LLKIRTHYCP  420
IQLEGEIHGG FRVFDRDDER AISLGWQDRC LITASAWQCV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12429RKRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.13e-54GRAS family protein