PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028068984.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 27376.2 Da PI: 8.651 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.8 | 2.4e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr g+lKKA+EL +LCdaev +iifsstgklye+ s XP_028068984.1 10 RIDNTTSRQVTFSKRRSGLLKKAKELAILCDAEVGLIIFSSTGKLYEFTS 59 8***********************************************75 PP | |||||||
2 | K-box | 84.5 | 2.3e-28 | 81 | 170 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++ + +q+e+a L+++++nLq+++R+l+Ge+L Ls+k+Lq+Le+qLe sl+ +R kK+++l+++i+el +k + +++en +L kk+ XP_028068984.1 81 NQVSDVKFWQREAAILRQQLHNLQENHRQLMGEELYGLSVKDLQNLENQLEMSLQGVRMKKEQILTDEIRELNQKGNLIHQENVELYKKV 170 677889*********************************************************************************997 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 235 aa Download sequence |
MGRGKIVIRR IDNTTSRQVT FSKRRSGLLK KAKELAILCD AEVGLIIFSS TGKLYEFTST 60 SMKSVIERYN KSREENHQLH NQVSDVKFWQ REAAILRQQL HNLQENHRQL MGEELYGLSV 120 KDLQNLENQL EMSLQGVRMK KEQILTDEIR ELNQKGNLIH QENVELYKKV NLIHQENMEM 180 YKKVYGTRDV IAVTENTQNP YGFSIGDDSC VPIHLQLSQP EHQIHEIPTS ETRSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-107 | MIKC_MADS family protein |