PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028068622.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 352aa MW: 40480.7 Da PI: 8.16

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028068622.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94	7e-30	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_028068622.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59 8***********************************************86 PP
2	K-box	83.3	5.4e-28	78	171	5	98
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++s e+++++l++e+a + ++ie L+ +R+llGedL+s++++eLqq+eqqLe+s++++R+kK+e ++eqi++l++kek l en +L +k+ XP_028068622.1 78 TDNSSVEENMQHLKHEAADMANQIELLEVAKRKLLGEDLGSCTMEELQQIEQQLERSVSRVRAKKMEAFMEQIDQLKEKEKVLTAENAKLCEKI 171 455578899*********************************************************************************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS 60 STQETIQRYQ RHTKAVQTDN SSVEENMQHL KHEAADMANQ IELLEVAKRK LLGEDLGSCT 120 MEELQQIEQQ LERSVSRVRA KKMEAFMEQI DQLKEKEKVL TAENAKLCEK ISSCAFISRG 180 NNSQWNTSHF FPTWCIYPWI SCPASDCSLS PCILRPILFH NFMEVEYIPV VSPLENQKEN 240 AIHFAKRTGH VIVTALNVVQ TGHVYGDFML FAKAAESKQE NPTLYMIEMK KVESTFHLSS 300 LEAMDFLDTF LSMNPDSSGH VKIHDFSRVL RLKACGLLKR SVTLLFFYFY FF

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS  60
STQETIQRYQ RHTKAVQTDN SSVEENMQHL KHEAADMANQ IELLEVAKRK LLGEDLGSCT  120
MEELQQIEQQ LERSVSRVRA KKMEAFMEQI DQLKEKEKVL TAENAKLCEK ISSCAFISRG  180
NNSQWNTSHF FPTWCIYPWI SCPASDCSLS PCILRPILFH NFMEVEYIPV VSPLENQKEN  240
AIHFAKRTGH VIVTALNVVQ TGHVYGDFML FAKAAESKQE NPTLYMIEMK KVESTFHLSS  300
LEAMDFLDTF LSMNPDSSGH VKIHDFSRVL RLKACGLLKR SVTLLFFYFY FF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	7e-75	MIKC_MADS family protein