PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028068621.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 366aa    MW: 41892.4 Da    PI: 8.6799
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028068621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.97.4e-301059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_028068621.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59
                    8***********************************************86 PP

2K-box843.2e-2898191598
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +++s  e+++++l++e+a + ++ie L+  +R+llGedL+s++++eLqq+eqqLe+s++++R+kK+e ++eqi++l++kek l  en +L +k+
  XP_028068621.1  98 TDNSSVEENMQHLKHEAADMANQIELLEVAKRKLLGEDLGSCTMEELQQIEQQLERSVSRVRAKKMEAFMEQIDQLKEKEKVLTAENAKLCEKI 191
                     455578899*********************************************************************************9998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS  60
RVKRDNGVTS FVLCSISKLL STQETIQRYQ RHTKAVQTDN SSVEENMQHL KHEAADMANQ  120
IELLEVAKRK LLGEDLGSCT MEELQQIEQQ LERSVSRVRA KKMEAFMEQI DQLKEKEKVL  180
TAENAKLCEK ISSCAFISRG NNSQWNTSHF FPTWCIYPWI SCPASDCSLS PCILRPILVE  240
YIPVVSPLEN QKENAIHFAK RTGHVIVTAL NVVQTGHVYG DFMLFAKAAE SKQENPTLYM  300
IEMKKVESTF HLSSLEAMDF LDTFLSMNPD SSGHVKIHDF SRVLRLKACG LLKRSVTLLF  360
FYFYFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.15e-70MIKC_MADS family protein