PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028068620.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MIKC_MADS

Protein Properties

Length: 369aa MW: 42383 Da PI: 8.6808

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028068620.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.9	7.5e-30	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_028068620.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59 8***********************************************86 PP
2	K-box	84	3.3e-28	98	191	5	98
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +++s e+++++l++e+a + ++ie L+ +R+llGedL+s++++eLqq+eqqLe+s++++R+kK+e ++eqi++l++kek l en +L +k+ XP_028068620.1 98 TDNSSVEENMQHLKHEAADMANQIELLEVAKRKLLGEDLGSCTMEELQQIEQQLERSVSRVRAKKMEAFMEQIDQLKEKEKVLTAENAKLCEKI 191 455578899*********************************************************************************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS 60 RVKRDNGVTS FVLCSISKLL STQETIQRYQ RHTKAVQTDN SSVEENMQHL KHEAADMANQ 120 IELLEVAKRK LLGEDLGSCT MEELQQIEQQ LERSVSRVRA KKMEAFMEQI DQLKEKEKVL 180 TAENAKLCEK ISSCAFISRG NNSQWNTSHF FPTWCIYPWI SCPASDCSLS PCILRPILFH 240 NFMEVEYIPV VSPLENQKEN AIHFAKRTGH VIVTALNVVQ TGHVYGDFML FAKAAESKQE 300 NPTLYMIEMK KTFHLSSLEA MDFLDTFLSM NPDSSGHVKI HDFSRVLRLK ACGLLKRSVT 360 LLFFYFYFF

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS  60
RVKRDNGVTS FVLCSISKLL STQETIQRYQ RHTKAVQTDN SSVEENMQHL KHEAADMANQ  120
IELLEVAKRK LLGEDLGSCT MEELQQIEQQ LERSVSRVRA KKMEAFMEQI DQLKEKEKVL  180
TAENAKLCEK ISSCAFISRG NNSQWNTSHF FPTWCIYPWI SCPASDCSLS PCILRPILFH  240
NFMEVEYIPV VSPLENQKEN AIHFAKRTGH VIVTALNVVQ TGHVYGDFML FAKAAESKQE  300
NPTLYMIEMK KTFHLSSLEA MDFLDTFLSM NPDSSGHVKI HDFSRVLRLK ACGLLKRSVT  360
LLFFYFYFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	5e-70	MIKC_MADS family protein