PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028068414.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 638aa    MW: 70012.1 Da    PI: 5.4283
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028068414.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS325.88.5e-1002766373374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++L+++Ae ++sg+++laq++Larl+++ +sp  +p+qR a+yf+eAL+  l+    + ++ lpp++ ++ +   ++ a+kl+se+sP+  f ++
  XP_028068414.1 276 DQLYKAAELIQSGNFSLAQEILARLNHQlSSPLSKPFQRSAFYFMEALQLSLLM--LNHVNPLPPRTPTPFDALFKMGAYKLLSEASPVTHFMNF 368
                     78************************99899*********************98..56667999999999************************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     t NqaIlea+    rvHiiDfdi+ G+QW++L+q+L sR+  ++p l+iT+++sp +++  el+ ++e+L++fA+e+gv+fe +v+   ++++++
  XP_028068414.1 369 TSNQAILEALGYGGRVHIIDFDIGFGAQWASLMQELPSRNrCKTPFLKITAFASPLTHHPLELSLMHENLTQFANEIGVNFELEVV---NFDAFD 460
                     ****************************************8899*****************************************8...899999 PP

            GRAS 191 leeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     +++ ++ p    +Ea+aV++ +   +            +++L+++k+lsPk++v +++ +++++ +F++++++al+yy +lfds++a    +se+
  XP_028068414.1 461 PNSYSIPPvrspDEAIAVSFPIWACSNR--LPV----LPSLLRFIKQLSPKIMVSMDRGCERTDLPFAQHLFHALQYYEVLFDSIDAA-NLASET 548
                     999988888889********98433322..233....457*********************************************655.4599** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++k+E +l++++i+++v  + ++      ++ +W++ + +aGF+pv+ls+++++qa+++l++ ++ g++ve+++gslvl+W+ r+L+++SaWr
  XP_028068414.1 549 MNKIESFLFQPRIESIVLGRLRA----PDHMPHWKQLFASAGFSPVALSNFTETQAECVLKRSQVGGFHVEKRQGSLVLYWQLRELMVASAWR 637
                     ******************98888....8889*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    
MIGMQFNLQD NGLLEVPGFD SSETKWKKGI SCASNEPISV LDTRRSPSPS TSTSTLSSSL  60
GGGATAVCGG SGDNTASLAA VSDTIHHLKW PESGPVGLTE PAGEWASELQ PIPAALEVSG  120
GERFGIGLED WESLLSESGQ DQSILRWIAT EFDDGNVALA AVVNQGSTAV DGGSNGGSGS  180
SSSTPKISSE TGNPRASNLG FNNNNTQIPI LGSSINNLFS SDLIYQLENP ESKPQIFNPQ  240
VFINRHQQLS QLSQTQIQTQ PSQHHLQQSP LMAIYDQLYK AAELIQSGNF SLAQEILARL  300
NHQLSSPLSK PFQRSAFYFM EALQLSLLML NHVNPLPPRT PTPFDALFKM GAYKLLSEAS  360
PVTHFMNFTS NQAILEALGY GGRVHIIDFD IGFGAQWASL MQELPSRNRC KTPFLKITAF  420
ASPLTHHPLE LSLMHENLTQ FANEIGVNFE LEVVNFDAFD PNSYSIPPVR SPDEAIAVSF  480
PIWACSNRLP VLPSLLRFIK QLSPKIMVSM DRGCERTDLP FAQHLFHALQ YYEVLFDSID  540
AANLASETMN KIESFLFQPR IESIVLGRLR APDHMPHWKQ LFASAGFSPV ALSNFTETQA  600
ECVLKRSQVG GFHVEKRQGS LVLYWQLREL MVASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-112GRAS family protein