PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028068299.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 303aa    MW: 35176.6 Da    PI: 10.4447
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028068299.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.21.4e-2551101151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     kri nk+nr vtfskRr g+lK A+E+SvLCda++ +iifs +gkl+eys+
  XP_028068299.1  51 KRIANKINRPVTFSKRRSGLLKNAHEISVLCDADIGLIIFSAKGKLFEYST 101
                     79***********************************************96 PP
2K-box94.81.4e-311212165100
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + ++++   + +++ e+ kL++++e L r+qRh++GedL++Ls+keLq+Le+qL+++lk+iRs+Kn+l+ ++i+elq k k+l eenk L kk++
  XP_028068299.1 121 QLVAADIDSQVRWTLEHVKLQARLEVLDRTQRHFMGEDLDTLSVKELQSLEHQLDSALKHIRSRKNQLMNDSISELQTKDKALLEENKLLAKKIK 215
                     555555566789*********************************************************************************98 PP

           K-box 100 e 100
                     e
  XP_028068299.1 216 E 216
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MAQSQAYFHQ THKFQLPRIA HQNTTTFFNP SCPNRPPLLH FSRRQRQVAL KRIANKINRP  60
VTFSKRRSGL LKNAHEISVL CDADIGLIIF SAKGKLFEYS TTSCMERILE RYERYSYAER  120
QLVAADIDSQ VRWTLEHVKL QARLEVLDRT QRHFMGEDLD TLSVKELQSL EHQLDSALKH  180
IRSRKNQLMN DSISELQTKD KALLEENKLL AKKIKEKEGK ALARHAQLEQ QNQDPAQIRF  240
TPLSLRKTHH LFFNPLPLST QGHAHLCPLF NPFLPLFAPH SQIHTPSLVF IKIVYAIKFP  300
SSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-77MIKC_MADS family protein