PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028068208.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 545aa    MW: 60744.4 Da    PI: 5.3269
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028068208.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.41.9e-1291755451374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L +cA avs++dl+ a++l+  l+ ++s +g+p+qRl ay++e+L+arl++s+s +yk+l+++e +   s+e +++++++++++P++kf++
  XP_028068208.1 175 LKQVLNACAAAVSDEDLSTATRLMDVLEPMVSVSGEPIQRLGAYMLEGLRARLLSSGSLIYKSLKCKEPT---SKELMSYMHILYQICPYYKFAY 266
                     5799*****************************************************************9...99999***************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                       aN  I +a+e+e+ +HiiDf+i qG QW++L++ La+Rp+gpp +RiTgv++++s   +   le +g+rL+kfA+++gvpfef+  +a +  +
  XP_028068208.1 267 NSANVSIWDAMENERVIHIIDFQIAQGSQWVSLMEVLAKRPGGPPYIRITGVDDSQSAhaRGAGLELVGQRLSKFAASCGVPFEFHG-AAMSGCE 360
                     ******************************************************998888999************************.89999** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +ele+L v+ gEalaVn+ ++lh+++desvs++++rd++L+lvk+lsPkvvv+veqe+++n++sF+ rf e+++yysa+f+s++a  pr++++ri
  XP_028068208.1 361 VELENLGVRYGEALAVNFPYMLHHMPDESVSTRNHRDRLLRLVKRLSPKVVVLVEQESNTNTTSFFPRFQETMDYYSAMFESIDAARPRDDKQRI 455
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + E+++++r+ivn+vacega+r+erhe ++kW++rl++aGF+p pls+++   +  +l+ ++++ yr+ee++g++ l Wk+r L + SaWr
  XP_028068208.1 456 SAEEHCVARDIVNIVACEGADRVERHELFGKWKARLMMAGFTPCPLSSSVSIAVIDVLKDYSKN-YRIEERDGAVQLFWKNRVLATSSAWR 545
                     **************************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    
MQTSQEHQSS SGFHGFYHQT MQQVEPYCFP SFQILHNNLC SDNDKQATQV SFQSCNEPHF  60
TLESSPASGY VVYDSPSAMS FSSNRTPISP LGSQSYLSDP HHSSDNAYGS PFSGSSIVDD  120
GNELRQILSV LETQLLGPES DIDDSCSCSF NGAAHEAYSS TNSNQMMEMI PSLDLKQVLN  180
ACAAAVSDED LSTATRLMDV LEPMVSVSGE PIQRLGAYML EGLRARLLSS GSLIYKSLKC  240
KEPTSKELMS YMHILYQICP YYKFAYNSAN VSIWDAMENE RVIHIIDFQI AQGSQWVSLM  300
EVLAKRPGGP PYIRITGVDD SQSAHARGAG LELVGQRLSK FAASCGVPFE FHGAAMSGCE  360
VELENLGVRY GEALAVNFPY MLHHMPDESV STRNHRDRLL RLVKRLSPKV VVLVEQESNT  420
NTTSFFPRFQ ETMDYYSAMF ESIDAARPRD DKQRISAEEH CVARDIVNIV ACEGADRVER  480
HELFGKWKAR LMMAGFTPCP LSSSVSIAVI DVLKDYSKNY RIEERDGAVQ LFWKNRVLAT  540
SSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein