PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028068109.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 736aa MW: 80490.2 Da PI: 6.3461

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028068109.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.4	5e-08	308	328	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G+C++Gd C +aHg XP_028068109.1 308 PCPDFRK-GQCRRGDLCEYAHG 328 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence
MCSGPEQLNP DTPAPSSSPK SATMTKDTSN LPGTVKTEIS FSSLLELAAD NDVEGFKQSI 60 LRIASAINEM GLWYGRQRAS KQMALENRTP LMVAAMYGSV DVVKLILSLS EADVNLSCGP 120 DKSTALHCAA SSGSVNAVDV VKMLLLAGAD RNLTDGNGHR PIDVIVAPSK FPDLKDTLER 180 LLRNDDSVHL PDIKVSFGGE KSNSSSHLSS PENGPLSSAV DSASSLNNFR LSDTRASSPP 240 ERKEYPVDPS LPDIKNSAYS TDEFRMFSFK IWPCSRAYSH DWTECPFVHP GENARRRDPR 300 KFHYSCVPCP DFRKGQCRRG DLCEYAHGVF ECWLHPAQYR TRLCKDGTGC SRRVCFFAHT 360 SEELRPLYMS TGSAVPSPRS STSAATFMDM AATLSLLPGS PSAVGGMAPP PFNPPMSPSG 420 NTITHPSMAW PQPNIPTLHL PGINLQTSRL RSSLNARDIP AEELEMLLEF EVQQQQLLND 480 MSCFSQTHLN TSSTKLPVHS KTLTPSNLDE FFSTEVSSPR FSDSAVFSPS HKSMVLNQFP 540 QQQNLQQQNL LSPINTNVYS AKNVDHPFLQ ASYHASSPGR MSPRGIEPQS PFSPRLSNHA 600 QREKQQTQLR SLSSRDLGTN LPWDLGSNGA GIVGSPVSSL SNWDSPNGKV DWSVNGDELA 660 RVRRSFSIDH NREEPDLSWV QSLVKESPTE TKETSIIPVS SATSSGEVSD LNSIEKLDHA 720 VLGACLEQMQ LDQIVA

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence

MCSGPEQLNP DTPAPSSSPK SATMTKDTSN LPGTVKTEIS FSSLLELAAD NDVEGFKQSI  60
LRIASAINEM GLWYGRQRAS KQMALENRTP LMVAAMYGSV DVVKLILSLS EADVNLSCGP  120
DKSTALHCAA SSGSVNAVDV VKMLLLAGAD RNLTDGNGHR PIDVIVAPSK FPDLKDTLER  180
LLRNDDSVHL PDIKVSFGGE KSNSSSHLSS PENGPLSSAV DSASSLNNFR LSDTRASSPP  240
ERKEYPVDPS LPDIKNSAYS TDEFRMFSFK IWPCSRAYSH DWTECPFVHP GENARRRDPR  300
KFHYSCVPCP DFRKGQCRRG DLCEYAHGVF ECWLHPAQYR TRLCKDGTGC SRRVCFFAHT  360
SEELRPLYMS TGSAVPSPRS STSAATFMDM AATLSLLPGS PSAVGGMAPP PFNPPMSPSG  420
NTITHPSMAW PQPNIPTLHL PGINLQTSRL RSSLNARDIP AEELEMLLEF EVQQQQLLND  480
MSCFSQTHLN TSSTKLPVHS KTLTPSNLDE FFSTEVSSPR FSDSAVFSPS HKSMVLNQFP  540
QQQNLQQQNL LSPINTNVYS AKNVDHPFLQ ASYHASSPGR MSPRGIEPQS PFSPRLSNHA  600
QREKQQTQLR SLSSRDLGTN LPWDLGSNGA GIVGSPVSSL SNWDSPNGKV DWSVNGDELA  660
RVRRSFSIDH NREEPDLSWV QSLVKESPTE TKETSIIPVS SATSSGEVSD LNSIEKLDHA  720
VLGACLEQMQ LDQIVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein